Package evaluation of Clustering on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T14:11:25.132 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.82s ################################################################################ # Installation # Installing Clustering... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [aaaa29a8] + Clustering v0.15.8 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [aaaa29a8] + Clustering v0.15.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 9.43s ################################################################################ # Testing # Testing Clustering Status `/tmp/jl_txqG98/Project.toml` [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [b8a86587] NearestNeighbors v0.4.21 [860ef19b] StableRNGs v1.0.3 [2913bbd2] StatsBase v0.34.5 [37e2e46d] LinearAlgebra [de0858da] Printf [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_txqG98/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [92d709cd] IrrationalConstants v0.2.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [bac558e1] OrderedCollections v1.8.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [3bb67fe8] TranscodingStreams v0.11.3 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [de0858da] Printf [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.23+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Runing tests: * seeding.jl ... Test Summary: | Pass Total Time seeding | 64 64 22.5s * kmeans.jl ... Iters objv objv-change | affected ------------------------------------------------------------- 0 9.828188e-01 1 4.914094e-01 -4.914094e-01 | 0 2 4.914094e-01 0.000000e+00 | 0 K-means converged with 2 iterations (objv = 0.4914093776351054) K-means converged with 2 iterations (objv = 0.3911238694546164) ┌ Warning: The clustering cost increased at iteration #2 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 Test Summary: | Pass Total Time kmeans() (k-means) | 130 130 1m50.8s * kmedoids.jl ... Iters objv objv-change ----------------------------------------------------- 0 1.633511e+00 1 1.633511e+00 0.000000e+00 K-medoids converged with 1 iterations (objv = 1.6335111163381681) K-medoids converged with 1 iterations (objv = 1.1562794866641528) Test Summary: | Pass Total Time kmedoids() (k-medoids) | 42 42 18.0s * affprop.jl ... Iters objv-change | exemplars ----------------------------------------------------- 1 4.6977e+00 | 4 2 2.3488e+00 | 4 3 1.1744e+00 | 4 4 5.8721e-01 | 4 5 2.9360e-01 | 4 6 1.4680e-01 | 4 7 7.3401e-02 | 4 [ Info: Affinity propagation converged with 7 iterations: 4 exemplars. [ Info: Affinity propagation converged with 7 iterations: 4 exemplars. Test Summary: | Pass Total Time affinityprop() (affinity propagation) | 79 79 6.9s * dbscan.jl ... Test Summary: | Pass Total Time dbscan() (DBSCAN clustering) | 60 60 10.7s * fuzzycmeans.jl ... Iters center-change ---------------------------- 1 4.502350e-01 2 3.056135e-01 3 5.975728e-01 4 1.183548e-01 5 1.557569e-02 [ Info: Fuzzy C-means converged with 5 iterations (δ = 0.015575691958245477) [ Info: Fuzzy C-means converged with 6 iterations (δ = 0.017052113673818172) ┌ Warning: Fuzzy C-means terminated without convergence after 100 iterations (δ = 0.0026712249989936233) └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/fuzzycmeans.jl:148 Test Summary: | Pass Total Time fuzzy_cmeans() | 40 40 20.1s * counts.jl ... Test Summary: | Pass Total Time counts() (contingency matrix) | 21 21 1.2s * silhouette.jl ... Test Summary: | Pass Total Time silhouettes() | 25 25 14.4s * clustering_quality.jl ... ┌ Warning: Detected empty cluster(s): #4. clustering_quality() results might be incorrect. └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/clustering_quality.jl:80 Test Summary: | Pass Total Time clustering_quality() | 38 38 28.5s * varinfo.jl ... Test Summary: | Pass Total Time varinfo() (variational information) | 7 7 0.1s * randindex.jl ... Test Summary: | Pass Total Time randindex() (Rand index) | 15 15 0.9s * hclust.jl ... Test Summary: | Pass Total Time hclust() (hierarchical clustering) | 6668 6668 24.6s * mcl.jl ... [ Info: Starting MCL iterations... ┌ Info: MCL iter. #0: rel.Δ= └ rel_delta = 0.0 [ Info: MCL converged after 0 iteration(s) [ Info: Generating MCL clusters... [ Info: Starting MCL iterations... [ Info: MCL converged after 0 iteration(s) [ Info: Generating MCL clusters... Test Summary: | Pass Broken Total Time MCL | 33 1 34 3m08.9s * vmeasure.jl ... Test Summary: | Pass Total Time V-measure | 9 9 1.7s * mutualinfo.jl ... Test Summary: | Pass Total Time mutualinfo() (mutual information) | 4 4 0.1s * confusion.jl ... Test Summary: | Pass Total Time confusion() (Confusion matrix) | 20 20 0.3s Testing Clustering tests passed Testing completed after 470.74s PkgEval succeeded after 499.16s