Package evaluation of ClimaCalibrate on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T22:29:40.609 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.24s ################################################################################ # Installation # Installing ClimaCalibrate... Resolving package versions... Installed ClimaCalibrate ─ v0.1.1 Updating `~/.julia/environments/v1.10/Project.toml` [4347a170] + ClimaCalibrate v0.1.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [d360d2e6] + ChainRulesCore v1.25.1 [4347a170] + ClimaCalibrate v0.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [f65535da] + Convex v0.16.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 ⌃ [aa8a2aa5] + EnsembleKalmanProcesses v2.0.1 [4e289a0a] + EnumX v1.0.5 [7a1cc6ca] + FFTW v1.9.0 [442a2c76] + FastGaussQuadrature v1.0.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [e4b2fa32] + GaussianRandomFields v2.2.6 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [40e66cde] + LDLFactorizations v0.10.1 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.40.2 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [c946c3f1] + SCS v2.1.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.14 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.0.1+1 ⌅ [656ef2d0] + OpenBLAS32_jll v0.3.24+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [f4f2fc5b] + SCS_jll v3.2.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [9abbd945] + Profile [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 1220.5s ################################################################################ # Testing # Testing ClimaCalibrate ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_x8xftB/Project.toml` [4c88cf16] Aqua v0.8.13 [95e48a1f] CalibrateEmulateSample v0.7.0 [4347a170] ClimaCalibrate v0.1.1 [5c42b081] ClimaParams v0.10.31 [8f4d0f93] Conda v1.10.2 [31c24e10] Distributions v0.25.120 ⌃ [aa8a2aa5] EnsembleKalmanProcesses v2.4.0 [033835bb] JLD2 v0.5.13 [1bc83da4] SafeTestsets v0.1.0 [ddb6d928] YAML v0.4.14 [ade2ca70] Dates [8ba89e20] Distributed [37e2e46d] LinearAlgebra [56ddb016] Logging [9a3f8284] Random [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test Status `/tmp/jl_x8xftB/Manifest.toml` [47edcb42] ADTypes v1.14.0 [14f7f29c] AMD v0.5.3 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 ⌅ [80f14c24] 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nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/trJai/src/EnsembleKalmanProcess.jl:251 ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/trJai/src/EnsembleKalmanProcess.jl:251 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#156". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#13#14"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#23#26"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#24#27"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#25#28"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/trJai/src/EnsembleKalmanProcess.jl:251 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#156". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#13#14"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#23#26"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#24#27"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#25#28"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 Initialized parameter values: Test Failed at /home/pkgeval/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:97 Expression: params.one == 3.416574531266089 Evaluated: 1.8171573383720587 == 3.416574531266089 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:97 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:97 Initialized parameter values: Test Failed at /home/pkgeval/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:98 Expression: params.two == 4.614950047803855 Evaluated: 5.408386812503563 == 4.614950047803855 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:98 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:97 ┌ Warning: Recommended minimum ensemble size (`N_ens`) is 10. Got `N_ens` = 5. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/trJai/src/EnsembleKalmanProcess.jl:249 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#156". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#13#14"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#23#26"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#24#27"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.ParameterDistributions.var"#25#28"{Int64, Int64}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 Test passing an EKP struct into `initialize`: Test Failed at /home/pkgeval/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:120 Expression: params.one == 3.1313341622997677 Evaluated: 2.407524034568839 == 3.1313341622997677 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:120 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:102 Test passing an EKP struct into `initialize`: Test Failed at /home/pkgeval/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:121 Expression: params.two == 5.063035177034372 Evaluated: 5.653901308513581 == 5.063035177034372 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:121 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/ClimaCalibrate/8tqh1/test/ekp_interface.jl:102 ┌ Warning: Number of samples 7 not divisible by batch size 2. The last 1 samples will be dropped. └ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/8tqh1/src/ekp_interface.jl:388 ┌ Warning: Number of samples 3 not divisible by batch size 5. The last 3 samples will be dropped. └ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/8tqh1/src/ekp_interface.jl:388 ┌ Warning: Number of samples 6 not divisible by batch size 7. The last 6 samples will be dropped. └ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/8tqh1/src/ekp_interface.jl:388 Test Summary: | Pass Fail Total Time EKP interface | 55 4 59 1m32.9s Test passing kwargs to EKP struct | 4 4 1.5s Test that a user-constructed EKP obj is same as initialized one | 14 14 1.5s Test loading latest EKP struct | 17 17 17.1s Initialized parameter values | 2 2 3.1s Test passing an EKP struct into `initialize` | 2 2 3.3s Environment variables | 8 8 0.3s minibatcher_over_samples tests | 6 6 0.3s observation_series_from_samples tests | 6 6 4.3s ERROR: LoadError: Some tests did not pass: 55 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ClimaCalibrate/8tqh1/test/runtests.jl:5 Testing failed after 103.71s ERROR: LoadError: Package ClimaCalibrate errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1375.22s: package has test failures