Package evaluation of Catalyst on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T00:07:35.594


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.16s


################################################################################
# Installation
#

Installing Catalyst...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [479239e8] + Catalyst v15.0.8
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.19.0
  [4c555306] + ArrayLayouts v1.11.1
⌅ [e2ed5e7c] + Bijections v0.1.10
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] + BlockArrays v1.6.3
  [70df07ce] + BracketingNonlinearSolve v1.3.0
  [2a0fbf3d] + CPUSummary v0.2.6
  [479239e8] + Catalyst v15.0.8
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.3
  [a80b9123] + CommonMark v0.9.1
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [b152e2b5] + CompositeTypes v0.1.4
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [2b5f629d] + DiffEqBase v6.175.0
  [459566f4] + DiffEqCallbacks v4.6.0
  [77a26b50] + DiffEqNoiseProcess v5.24.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54
  [8d63f2c5] + DispatchDoctor v0.4.19
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [5b8099bc] + DomainSets v0.7.15
  [7c1d4256] + DynamicPolynomials v0.6.2
  [06fc5a27] + DynamicQuantities v1.8.0
  [4e289a0a] + EnumX v1.0.5
  [f151be2c] + EnzymeCore v0.8.11
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [a4df4552] + FastPower v1.1.2
  [1a297f60] + FillArrays v1.13.0
  [64ca27bc] + FindFirstFunctions v1.4.1
  [6a86dc24] + FiniteDiff v2.27.0
  [1fa38f19] + Format v1.3.7
⌅ [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [d9f16b24] + Functors v0.5.2
  [46192b85] + GPUArraysCore v0.2.0
  [c27321d9] + Glob v1.3.1
  [86223c79] + Graphs v1.13.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.5
  [18e54dd8] + IntegerMathUtils v0.1.2
  [8197267c] + IntervalSets v0.7.11
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [ae98c720] + Jieko v0.2.1
  [98e50ef6] + JuliaFormatter v2.1.2
⌅ [70703baa] + JuliaSyntax v0.4.10
  [ccbc3e58] + JumpProcesses v9.15.0
  [ba0b0d4f] + Krylov v0.10.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [23fbe1c1] + Latexify v0.16.8
  [10f19ff3] + LayoutPointers v0.1.17
  [5078a376] + LazyArrays v2.6.1
  [87fe0de2] + LineSearch v0.1.4
  [d3d80556] + LineSearches v7.3.0
  [7ed4a6bd] + LinearSolve v3.17.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
  [bb5d69b7] + MaybeInplace v0.1.4
  [e1d29d7a] + Missings v1.2.0
⌅ [961ee093] + ModelingToolkit v9.80.4
  [2e0e35c7] + Moshi v0.3.5
  [46d2c3a1] + MuladdMacro v0.2.4
  [102ac46a] + MultivariatePolynomials v0.5.9
  [d8a4904e] + MutableArithmetics v1.6.4
  [d41bc354] + NLSolversBase v7.9.1
  [77ba4419] + NaNMath v1.1.3
  [8913a72c] + NonlinearSolve v4.9.0
  [be0214bd] + NonlinearSolveBase v1.12.0
  [5959db7a] + NonlinearSolveFirstOrder v1.5.0
  [9a2c21bd] + NonlinearSolveQuasiNewton v1.6.0
  [26075421] + NonlinearSolveSpectralMethods v1.2.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [d96e819e] + Parameters v0.12.3
  [e409e4f3] + PoissonRandom v0.4.4
  [f517fe37] + Polyester v0.7.18
  [1d0040c9] + PolyesterWeave v0.2.2
  [85a6dd25] + PositiveFactorizations v0.2.4
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [27ebfcd6] + Primes v0.5.7
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [74087812] + Random123 v1.7.1
  [e6cf234a] + RandomNumbers v1.6.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.33.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [ae5879a3] + ResettableStacks v1.1.1
  [79098fc4] + Rmath v0.8.0
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.15
  [9dfe8606] + SCCNonlinearSolve v1.2.0
  [94e857df] + SIMDTypes v0.1.0
  [0bca4576] + SciMLBase v2.97.0
  [19f34311] + SciMLJacobianOperators v0.1.6
  [c0aeaf25] + SciMLOperators v1.3.1
  [53ae85a6] + SciMLStructures v1.7.0
  [efcf1570] + Setfield v1.1.2
  [727e6d20] + SimpleNonlinearSolve v2.5.0
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [0a514795] + SparseMatrixColorings v0.4.20
  [276daf66] + SpecialFunctions v2.5.1
  [aedffcd0] + Static v1.2.0
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [7792a7ef] + StrideArraysCore v0.5.7
  [892a3eda] + StringManipulation v0.4.1
  [2efcf032] + SymbolicIndexingInterface v0.3.40
  [19f23fe9] + SymbolicLimits v0.2.2
  [d1185830] + SymbolicUtils v3.29.0
  [0c5d862f] + Symbolics v6.40.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [ed4db957] + TaskLocalValues v0.1.2
  [8ea1fca8] + TermInterface v2.0.0
  [1c621080] + TestItems v1.0.0
  [8290d209] + ThreadingUtilities v0.5.4
  [a759f4b9] + TimerOutputs v0.5.29
  [410a4b4d] + Tricks v0.1.10
  [781d530d] + TruncatedStacktraces v1.4.0
  [5c2747f8] + URIs v1.5.2
  [3a884ed6] + UnPack v1.0.2
  [1986cc42] + Unitful v1.22.1
  [a7c27f48] + Unityper v0.1.6
  [897b6980] + WeakValueDicts v0.1.0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [856f044c] + MKL_jll v2025.0.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [4af54fe1] + LazyArtifacts
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 9.07s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 745.44s


################################################################################
# Testing
#

     Testing Catalyst
      Status `/tmp/jl_JGR7wZ/Project.toml`
  [479239e8] Catalyst v15.0.8
  [861a8166] Combinatorics v1.0.3
  [82cc6244] DataInterpolations v8.0.1
  [864edb3b] DataStructures v0.18.22
  [2b5f629d] DiffEqBase v6.175.0
  [459566f4] DiffEqCallbacks v4.6.0
  [ffbed154] DocStringExtensions v0.9.4
  [5b8099bc] DomainSets v0.7.15
  [7c1d4256] DynamicPolynomials v0.6.2
  [06fc5a27] DynamicQuantities v1.8.0
  [4e289a0a] EnumX v1.0.5
  [86223c79] Graphs v1.13.0
  [ccbc3e58] JumpProcesses v9.15.0
  [b964fa9f] LaTeXStrings v1.4.0
  [23fbe1c1] Latexify v0.16.8
  [1914dd2f] MacroTools v0.5.16
⌅ [961ee093] ModelingToolkit v9.80.4
  [8913a72c] NonlinearSolve v4.9.0
  [6ad6398a] OrdinaryDiffEqBDF v1.5.1
  [50262376] OrdinaryDiffEqDefault v1.4.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.10.1
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.2.0
  [d96e819e] Parameters v0.12.3
  [91a5bcdd] Plots v1.40.13
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.15
  [1bc83da4] SafeTestsets v0.1.0
  [0bca4576] SciMLBase v2.97.0
  [efcf1570] Setfield v1.1.2
  [860ef19b] StableRNGs v1.0.3
  [90137ffa] StaticArrays v1.9.13
  [9672c7b4] SteadyStateDiffEq v2.5.0
  [789caeaf] StochasticDiffEq v6.80.0
  [d1185830] SymbolicUtils v3.29.0
  [0c5d862f] Symbolics v6.40.0
  [1986cc42] Unitful v1.22.1
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [44cfe95a] Pkg v1.10.0
  [9a3f8284] Random
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_JGR7wZ/Manifest.toml`
  [47edcb42] ADTypes v1.14.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.19.0
  [4c555306] ArrayLayouts v1.11.1
⌅ [e2ed5e7c] Bijections v0.1.10
  [d1d4a3ce] BitFlags v0.1.9
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] BlockArrays v1.6.3
  [70df07ce] BracketingNonlinearSolve v1.3.0
  [2a0fbf3d] CPUSummary v0.2.6
  [479239e8] Catalyst v15.0.8
  [d360d2e6] ChainRulesCore v1.25.1
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [944b1d66] CodecZlib v0.7.8
  [35d6a980] ColorSchemes v3.29.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [861a8166] Combinatorics v1.0.3
  [a80b9123] CommonMark v0.9.1
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [b152e2b5] CompositeTypes v0.1.4
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [187b0558] ConstructionBase v1.5.8
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [82cc6244] DataInterpolations v8.0.1
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [2b5f629d] DiffEqBase v6.175.0
  [459566f4] DiffEqCallbacks v4.6.0
  [77a26b50] DiffEqNoiseProcess v5.24.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
⌅ [a0c0ee7d] DifferentiationInterface v0.6.54
  [8d63f2c5] DispatchDoctor v0.4.19
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.4
  [5b8099bc] DomainSets v0.7.15
  [7c1d4256] DynamicPolynomials v0.6.2
  [06fc5a27] DynamicQuantities v1.8.0
  [4e289a0a] EnumX v1.0.5
  [f151be2c] EnzymeCore v0.8.11
  [460bff9d] ExceptionUnwrapping v0.1.11
  [e2ba6199] ExprTools v0.1.10
  [55351af7] ExproniconLite v0.10.14
  [c87230d0] FFMPEG v0.4.2
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [a4df4552] FastPower v1.1.2
  [1a297f60] FillArrays v1.13.0
  [64ca27bc] FindFirstFunctions v1.4.1
  [6a86dc24] FiniteDiff v2.27.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
⌅ [f6369f11] ForwardDiff v0.10.38
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [d9f16b24] Functors v0.5.2
  [46192b85] GPUArraysCore v0.2.0
  [28b8d3ca] GR v0.73.16
  [c27321d9] Glob v1.3.1
  [86223c79] Graphs v1.13.0
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v1.10.16
  [34004b35] HypergeometricFunctions v0.3.28
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.5
  [18e54dd8] IntegerMathUtils v0.1.2
  [8197267c] IntervalSets v0.7.11
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [1019f520] JLFzf v0.1.11
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [ae98c720] Jieko v0.2.1
  [98e50ef6] JuliaFormatter v2.1.2
⌅ [70703baa] JuliaSyntax v0.4.10
  [ccbc3e58] JumpProcesses v9.15.0
  [ba0b0d4f] Krylov v0.10.1
  [b964fa9f] LaTeXStrings v1.4.0
  [23fbe1c1] Latexify v0.16.8
  [10f19ff3] LayoutPointers v0.1.17
  [5078a376] LazyArrays v2.6.1
  [2d8b4e74] LevyArea v1.0.0
  [87fe0de2] LineSearch v0.1.4
  [d3d80556] LineSearches v7.3.0
  [7ed4a6bd] LinearSolve v3.17.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.16
  [d125e4d3] ManualMemory v0.1.8
  [bb5d69b7] MaybeInplace v0.1.4
  [739be429] MbedTLS v1.1.9
  [442fdcdd] Measures v0.3.2
  [e1d29d7a] Missings v1.2.0
⌅ [961ee093] ModelingToolkit v9.80.4
  [2e0e35c7] Moshi v0.3.5
  [46d2c3a1] MuladdMacro v0.2.4
  [102ac46a] MultivariatePolynomials v0.5.9
  [d8a4904e] MutableArithmetics v1.6.4
  [d41bc354] NLSolversBase v7.9.1
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.1.3
  [8913a72c] NonlinearSolve v4.9.0
  [be0214bd] NonlinearSolveBase v1.12.0
  [5959db7a] NonlinearSolveFirstOrder v1.5.0
  [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0
  [26075421] NonlinearSolveSpectralMethods v1.2.0
  [6fe1bfb0] OffsetArrays v1.17.0
  [4d8831e6] OpenSSL v1.5.0
  [429524aa] Optim v1.12.0
  [bac558e1] OrderedCollections v1.8.1
  [6ad6398a] OrdinaryDiffEqBDF v1.5.1
  [bbf590c4] OrdinaryDiffEqCore v1.26.0
  [50262376] OrdinaryDiffEqDefault v1.4.0
  [4302a76b] OrdinaryDiffEqDifferentiation v1.9.1
  [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.10.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.10.1
  [2d112036] OrdinaryDiffEqSDIRK v1.3.0
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.2.0
  [90014a1f] PDMats v0.11.35
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
  [ccf2f8ad] PlotThemes v3.3.0
  [995b91a9] PlotUtils v1.4.3
  [91a5bcdd] Plots v1.40.13
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        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary:      | Pass  Total     Time
Reaction Structure |   95     95  1m26.4s
 86.879099 seconds (18.53 M allocations: 1.280 GiB, 2.47% gc time, 54.13% compilation time)
[ Info: Boundary condition species detected. As constraint equations are not currently supported when converting to SDESystems, the resulting system will be undetermined. Consider using constant species instead.
┌ Warning: JumpProblem(rn::ReactionSystem, prob, ...) is deprecated and will be removed in Catalyst 16. Use JumpProblem(JumpInputs(rn, ...), ...) insead.
│   caller = top-level scope at reactionsystem.jl:674
└ @ Core ~/.julia/packages/Catalyst/8qDWw/test/reactionsystem_core/reactionsystem.jl:674
┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`.
└ @ Catalyst ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem_conversions.jl:996
┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`.
└ @ Catalyst ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem_conversions.jl:996
┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`.
└ @ Catalyst ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem_conversions.jl:996
Test Summary:            | Pass  Broken  Total     Time
ReactionSystem Structure |  302       2    304  9m05.5s
545.485811 seconds (155.20 M allocations: 10.626 GiB, 2.05% gc time, 75.88% compilation time)
Test Summary:          | Pass  Total   Time
Higher Order Reactions |   38     38  33.0s
 33.004900 seconds (18.03 M allocations: 1.039 GiB, 1.86% gc time, 91.40% compilation time)
Test Summary:          | Pass  Total     Time
Symbolic Stoichiometry |   26     26  4m07.3s
247.260383 seconds (75.65 M allocations: 5.172 GiB, 1.78% gc time, 97.78% compilation time)
┌ Warning: DiscreteProblem(rn::ReactionSystem, ...) is deprecated and will be removed in Catalyst 16. Use JumpInputs(rn, ...) instead.
│   caller = top-level scope at parameter_type_designation.jl:76
└ @ Core ~/.julia/packages/Catalyst/8qDWw/test/reactionsystem_core/parameter_type_designation.jl:76
Test Summary:              | Pass  Total     Time
Parameter Type Designation |  363    363  1m34.5s
 94.529184 seconds (35.15 M allocations: 2.379 GiB, 1.47% gc time, 99.23% compilation time)
Test Summary:        | Pass  Total   Time
Custom CRN Functions |  109    109  37.1s
 37.122156 seconds (27.70 M allocations: 1.390 GiB, 1.89% gc time, 82.20% compilation time)
Test Summary:                | Pass  Broken  Total     Time
Coupled CRN/Equation Systems |  156       1    157  8m16.1s
496.121360 seconds (201.06 M allocations: 15.022 GiB, 2.63% gc time, 88.74% compilation time)
Test Summary: | Pass  Broken  Total     Time
Events        |   73       2     75  4m15.5s
255.486085 seconds (77.63 M allocations: 5.123 GiB, 1.12% gc time, 98.96% compilation time)

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 222 running 1 of 1

signal (10): User defined signal 1
_ZNK4llvm12DenseMapBaseINS_8DenseMapIPKvPNS_4PassENS_12DenseMapInfoIS3_vEENS_6detail12DenseMapPairIS3_S5_EEEES3_S5_S7_SA_E15LookupBucketForIS3_EEbRKT_RPKSA_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm13PMDataManager16findAnalysisPassEPKvb.constprop.466 at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm13PMDataManager30collectRequiredAndUsedAnalysesERNS_15SmallVectorImplIPNS_4PassEEERNS1_IPKvEES3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm13PMDataManager3addEPNS_4PassEb at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm17PMTopLevelManager12schedulePassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm17PMTopLevelManager12schedulePassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm17PMTopLevelManager12schedulePassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm17LLVMTargetMachine17addPassesToEmitMCERNS_6legacy15PassManagerBaseERPNS_9MCContextERNS_17raw_pwrite_streamEb at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
operator() at /source/src/jitlayers.cpp:1311
_ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
emit at /source/src/jitlayers.cpp:724
_ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
addModule at /source/src/jitlayers.cpp:1604
jl_add_to_ee at /source/src/jitlayers.cpp:2015
jl_add_to_ee at /source/src/jitlayers.cpp:1994
_jl_compile_codeinst at /source/src/jitlayers.cpp:276
jl_generate_fptr_impl at /source/src/jitlayers.cpp:528
jl_compile_method_internal at /source/src/gf.c:2481 [inlined]
jl_compile_method_internal at /source/src/gf.c:2368
_jl_invoke at /source/src/gf.c:2887 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
macro expansion at /home/pkgeval/.julia/packages/OrdinaryDiffEqDefault/7CaO0/src/OrdinaryDiffEqDefault.jl:80 [inlined]
macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined]
top-level scope at /home/pkgeval/.julia/packages/OrdinaryDiffEqDefault/7CaO0/src/OrdinaryDiffEqDefault.jl:26
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_invoke at /source/src/gf.c:2902
jl_toplevel_eval_flex at /source/src/toplevel.c:925
jl_eval_module_expr at /source/src/toplevel.c:215 [inlined]
jl_toplevel_eval_flex at /source/src/toplevel.c:736
jl_toplevel_eval_flex at /source/src/toplevel.c:877
ijl_toplevel_eval_in at /source/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
include_string at ./loading.jl:2146
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
_include at ./loading.jl:2206
include at ./Base.jl:495 [inlined]
include_package_for_output at ./loading.jl:2292
jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
do_call at /source/src/interpreter.c:126
eval_value at /source/src/interpreter.c:223
eval_stmt_value at /source/src/interpreter.c:174 [inlined]
eval_body at /source/src/interpreter.c:635
jl_interpret_toplevel_thunk at /source/src/interpreter.c:775
jl_toplevel_eval_flex at /source/src/toplevel.c:934
jl_toplevel_eval_flex at /source/src/toplevel.c:877
ijl_toplevel_eval_in at /source/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
include_string at ./loading.jl:2146
include_string at ./loading.jl:2156 [inlined]
exec_options at ./client.jl:321
_start at ./client.jl:557
jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
true_main at /source/src/jlapi.c:582
jl_repl_entrypoint at /source/src/jlapi.c:731
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7288ad08d249)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 171 running 0 of 1

signal (10): User defined signal 1
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478
poptask at ./task.jl:999
wait at ./task.jl:1008
#wait#647 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
#728 at ./asyncevent.jl:304
jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
start_task at /source/src/task.c:1256
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478
poptask at ./task.jl:999
wait at ./task.jl:1008
#wait#647 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
wait at ./process.jl:661
jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048
#130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992
withenv at ./env.jl:257
#117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840
with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721
#115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810
#mktempdir#24 at ./file.jl:766
unknown function (ip: 0x7c6cc005a970)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
mktempdir at ./file.jl:762
mktempdir at ./file.jl:762 [inlined]
#sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768
sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759
unknown function (ip: 0x7c6cc0053265)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
#test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971
test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined]
#test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444
test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423
unknown function (ip: 0x7c6cc0052d50)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
#test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
unknown function (ip: 0x7c6cc0052610)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148
#test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
#test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146
unknown function (ip: 0x7c6cc004ed09)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
do_call at /source/src/interpreter.c:126
eval_value at /source/src/interpreter.c:223
eval_stmt_value at /source/src/interpreter.c:174 [inlined]
eval_body at /source/src/interpreter.c:635
eval_body at /source/src/interpreter.c:544
eval_body at /source/src/interpreter.c:544
jl_interpret_toplevel_thunk at /source/src/interpreter.c:775
jl_toplevel_eval_flex at /source/src/toplevel.c:934
jl_toplevel_eval_flex at /source/src/toplevel.c:877
ijl_toplevel_eval_in at /source/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
include_string at ./loading.jl:2146
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
_include at ./loading.jl:2206
include at ./Base.jl:495
jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
exec_options at ./client.jl:323
_start at ./client.jl:557
jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
true_main at /source/src/jlapi.c:582
jl_repl_entrypoint at /source/src/jlapi.c:731
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7c6cc0e4b249)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007c6cb3800010 Total snapshots: 1. Utilization: 0%
 ╎1 @Base/client.jl:557; _start()
 ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions)
 ╎  1 @Base/Base.jl:495; include(mod::Module, _path::String)
 ╎   1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S…
 ╎    1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M…
 ╎     1 @Base/boot.jl:385; eval
 ╎    ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(…
 ╎    ╎  1 @Pkg/src/API.jl:146; #test#74
 ╎    ╎   1 @Pkg/src/API.jl:147; test
 ╎    ╎    1 @Pkg/src/API.jl:147; #test#75
 ╎    ╎     1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ…
 ╎    ╎    ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i…
 ╎    ╎    ╎  1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::…
 ╎    ╎    ╎   1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector…
 ╎    ╎    ╎    1 …/src/Operations.jl:1915; test
 ╎    ╎    ╎     1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::…
 ╎    ╎    ╎    ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::…
 ╎    ╎    ╎    ╎  1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty…
 ╎    ╎    ╎    ╎   1 @Base/file.jl:762; mktempdir
 ╎    ╎    ╎    ╎    1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin…
 ╎    ╎    ╎    ╎     1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11…
 ╎    ╎    ╎    ╎    ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"…
 ╎    ╎    ╎    ╎    ╎  1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio…
 ╎    ╎    ╎    ╎    ╎   1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122…
 ╎    ╎    ╎    ╎    ╎    1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130…
 ╎    ╎    ╎    ╎    ╎     1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13…
 ╎    ╎    ╎    ╎    ╎    ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,…
 ╎    ╎    ╎    ╎    ╎    ╎  1 …se/process.jl:661; wait(x::Base.Process)
 ╎    ╎    ╎    ╎    ╎    ╎   1 …/condition.jl:125; wait
 ╎    ╎    ╎    ╎    ╎    ╎    1 …condition.jl:130; wait(c::Base.GenericConditi…
 ╎    ╎    ╎    ╎    ╎    ╎     1 …ase/task.jl:1008; wait()
 ╎    ╎    ╎    ╎    ╎    ╎    ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL…


[1] signal (15): Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478

[171] signal (15): Terminated
in expression starting at /home/pkgeval/.julia/packages/Catalyst/8qDWw/test/reactionsystem_core/functional_parameters.jl:13
poptask at ./task.jl:999
wait at ./task.jl:1008
#wait#647 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
wait at ./asyncevent.jl:159 [inlined]
profile_printing_listener at ./Base.jl:572
#1058 at ./Base.jl:608
jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
start_task at /source/src/task.c:1256
unknown function (ip: (nil))
Allocations: 18110078 (Pool: 18068291; Big: 41787); GC: 15
_ZN4llvm9GraphDiffIPNS_10BasicBlockELb0EED2Ev at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line)
unknown function (ip: 0x7370d8532ab7)
unknown function (ip: (nil))
Allocations: 611875914 (Pool: 610443399; Big: 1432515); GC: 383

PkgEval terminated after 2738.63s: test duration exceeded the time limit