Package evaluation of COBREXA on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T17:19:35.452 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.01s ################################################################################ # Installation # Installing COBREXA... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [babc4406] + COBREXA v2.8.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.0 [babc4406] + COBREXA v2.8.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [5515826b] + ConstraintTrees v1.9.0 [187b0558] + ConstructionBase v1.5.8 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [f6369f11] + ForwardDiff v1.0.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.26.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.40.2 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [276daf66] + SpecialFunctions v2.5.1 [860ef19b] + StableRNGs v1.0.3 [1e83bf80] + StaticArraysCore v1.4.3 [856f2bd8] + StructTypes v1.11.0 [3bb67fe8] + TranscodingStreams v0.11.3 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [9abbd945] + Profile [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 117.82s ################################################################################ # Testing # Testing COBREXA Status `/tmp/jl_psbL9v/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 ⌅ [4c88cf16] Aqua v0.7.4 [babc4406] COBREXA v2.8.0 [336ed68f] CSV v0.10.15 ⌅ [61c947e1] Clarabel v0.6.0 [5515826b] ConstraintTrees v1.9.0 [ffbed154] DocStringExtensions v0.9.4 [87dc4568] HiGHS v1.18.0 [475c1105] JSONFBCModels v1.0.0 [4076af6c] JuMP v1.26.0 [3e8f9d1a] SBMLFBCModels v1.1.0 [860ef19b] StableRNGs v1.0.3 [6dd1b50a] Tulip v0.9.7 [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra [44cfe95a] Pkg v1.10.0 [9a3f8284] Random [ea8e919c] SHA v0.7.0 [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_psbL9v/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 ⌅ [4c88cf16] Aqua v0.7.4 [6e4b80f9] BenchmarkTools v1.6.0 [babc4406] COBREXA v2.8.0 [336ed68f] CSV v0.10.15 ⌅ [61c947e1] Clarabel v0.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [5515826b] ConstraintTrees v1.9.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [e2ba6199] ExprTools v0.1.10 [9aa1b823] FastClosures v0.3.2 [48062228] FilePathsBase v0.9.24 [f6369f11] ForwardDiff v1.0.1 [14197337] GenericLinearAlgebra v0.3.17 [87dc4568] HiGHS v1.18.0 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [475c1105] JSONFBCModels v1.0.0 [4076af6c] JuMP v1.26.0 ⌅ [ba0b0d4f] Krylov v0.9.10 [40e66cde] LDLFactorizations v0.10.1 [5c8ed15e] LinearOperators v2.10.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.40.2 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [bfc457fd] QDLDL v0.4.1 [10f199a5] QPSReader v0.2.1 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.0 [91c51154] SentinelArrays v1.4.8 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [6dd1b50a] Tulip v0.9.7 [1986cc42] Unitful v1.22.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [8fd58aa0] HiGHS_jll v1.11.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: misc.jl done in 41.78s docs/01-loading-and-saving.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30009 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/01-loading-and-saving.jl:30 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/01-loading-and-saving.jl:30 docs/02a-flux-balance-analysis.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 74 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02a-flux-balance-analysis.jl:25 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02a-flux-balance-analysis.jl:25 docs/02b-optimizer-parameters.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02b-optimizer-parameters.jl:40 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02b-optimizer-parameters.jl:40 docs/02c-model-modifications.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30032 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02c-model-modifications.jl:46 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02c-model-modifications.jl:46 docs/02d-constraint-modifications.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02d-constraint-modifications.jl:28 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/02d-constraint-modifications.jl:28 docs/03a-flux-variability-analysis.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 11314 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03a-flux-variability-analysis.jl:27 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03a-flux-variability-analysis.jl:27 docs/03b-parsimonious-flux-balance.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30018 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03b-parsimonious-flux-balance.jl:28 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03b-parsimonious-flux-balance.jl:28 docs/03c-envelopes.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03c-envelopes.jl:28 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03c-envelopes.jl:28 docs/03d-unidirectional.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30032 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03d-unidirectional.jl:33 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/03d-unidirectional.jl:33 docs/04-community-models.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30006 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/04-community-models.jl:24 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/04-community-models.jl:24 docs/04a-composition-models.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30021 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/04a-composition-models.jl:31 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/04a-composition-models.jl:31 docs/05a-minimization-of-metabolic-adjustment.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30056 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05a-minimization-of-metabolic-adjustment.jl:28 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05a-minimization-of-metabolic-adjustment.jl:28 docs/05b-enzyme-constrained-models.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 7255 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05b-enzyme-constrained-models.jl:27 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05b-enzyme-constrained-models.jl:27 docs/05c-mmdf.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 5211 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05c-mmdf.jl:33 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05c-mmdf.jl:33 docs/05d-loopless-models.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05d-loopless-models.jl:26 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05d-loopless-models.jl:26 docs/05e-knockouts.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 74 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05e-knockouts.jl:27 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05e-knockouts.jl:27 docs/05f-cyclefree.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 7228 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05f-cyclefree.jl:28 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05f-cyclefree.jl:28 docs/05g-gapfilling.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05g-gapfilling.jl:42 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/05g-gapfilling.jl:42 docs/06a-sampling.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30025 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/06a-sampling.jl:27 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/06a-sampling.jl:27 docs/06b-screening.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30031 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/06b-screening.jl:24 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/06b-screening.jl:24 docs/07a-srba.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 4174 ms: Couldn't connect to server while requesting http://bigg.ucsd.edu/static/models/iML1515.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/07a-srba.jl:34 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/07a-srba.jl:34 docs/07b-community-ecfba.jl: Error During Test at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:40 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30023 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/iML1515.json Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [inlined] [15] download_data_file(url::String, path::String, hash::String) @ AbstractFBCModels ~/.julia/packages/AbstractFBCModels/bQECn/src/utils.jl:128 [16] download_model(::String, ::Vararg{String}; kwargs::@Kwargs{}) @ COBREXA ~/.julia/packages/COBREXA/1Pbwx/src/io.jl:119 [17] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/docs/src/examples/07b-community-ecfba.jl:38 [18] include @ ./client.jl:494 [inlined] [19] macro expansion @ ./timing.jl:395 [inlined] [20] run_test_file(path::String) @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:34 [21] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [23] run_doc_examples() @ Main ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:41 [24] macro expansion @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:62 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [26] top-level scope @ ~/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:59 [27] include(fname::String) @ Base.MainInclude ./client.jl:494 [28] top-level scope @ none:6 [29] eval @ ./boot.jl:385 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [31] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/docs/src/examples/07b-community-ecfba.jl:38 [ Info: aqua.jl done in 6.15s Test Summary: | Pass Error Total Time COBREXA test suite | 38 22 60 9m12.6s Miscellaneous tests | 32 32 42.9s docs/01-loading-and-saving.jl | 1 1 33.5s docs/02a-flux-balance-analysis.jl | 1 1 0.5s docs/02b-optimizer-parameters.jl | 1 1 35.2s docs/02c-model-modifications.jl | 1 1 30.5s docs/02d-constraint-modifications.jl | 1 1 30.5s docs/03a-flux-variability-analysis.jl | 1 1 11.7s docs/03b-parsimonious-flux-balance.jl | 1 1 30.5s docs/03c-envelopes.jl | 1 1 30.5s docs/03d-unidirectional.jl | 1 1 30.6s docs/04-community-models.jl | 1 1 30.4s docs/04a-composition-models.jl | 1 1 30.5s docs/05a-minimization-of-metabolic-adjustment.jl | 1 1 30.5s docs/05b-enzyme-constrained-models.jl | 1 1 7.7s docs/05c-mmdf.jl | 1 1 5.6s docs/05d-loopless-models.jl | 1 1 30.5s docs/05e-knockouts.jl | 1 1 0.5s docs/05f-cyclefree.jl | 1 1 7.7s docs/05g-gapfilling.jl | 1 1 30.4s docs/06a-sampling.jl | 1 1 30.5s docs/06b-screening.jl | 1 1 30.5s docs/07a-srba.jl | 1 1 4.6s docs/07b-community-ecfba.jl | 1 1 30.4s Automated QUality Assurance | 6 6 6.1s ERROR: LoadError: Some tests did not pass: 38 passed, 0 failed, 22 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/COBREXA/1Pbwx/test/runtests.jl:58 Testing failed after 257.01s ERROR: LoadError: Package COBREXA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 883.4s: package tests unexpectedly errored