Package evaluation of BridgeSDEInference on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T18:12:36.396 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.21s ################################################################################ # Installation # Installing BridgeSDEInference... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [46d747a0] + BridgeSDEInference v0.3.2 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [2d3116d5] + Bridge v0.11.6 [46d747a0] + BridgeSDEInference v0.3.2 [d360d2e6] + ChainRulesCore v1.25.1 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 ⌃ [b552c78f] + DiffRules v1.14.0 ⌅ [31c24e10] + Distributions v0.23.12 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] + ExprTools v0.1.10 ⌅ [1a297f60] + FillArrays v0.9.7 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.38 ⌅ [43dcc890] + GaussianDistributions v0.3.3 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.12.10 [d8418881] + Intervals v1.10.0 [3587e190] + InverseFunctions v0.1.17 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 ⌅ [90014a1f] + PDMats v0.10.1 [d96e819e] + Parameters v0.12.3 ⌅ [f27b6e38] + Polynomials v2.0.25 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 ⌅ [b0e4dd01] + RollingFunctions v0.6.2 [6c6a2e73] + Scratch v1.2.1 [a2af1166] + SortingAlgorithms v1.2.1 ⌅ [276daf66] + SpecialFunctions v0.10.3 ⌅ [90137ffa] + StaticArrays v0.12.6 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v0.9.18 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.21.3 [2c80a279] + Trajectories v0.2.2 [3a884ed6] + UnPack v1.0.2 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 112.01s ################################################################################ # Testing # Testing BridgeSDEInference ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_r0NhA9/Project.toml` [2d3116d5] Bridge v0.11.6 [46d747a0] BridgeSDEInference v0.3.2 ⌅ [31c24e10] Distributions v0.23.12 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [43dcc890] GaussianDistributions v0.3.3 ⌅ [a98d9a8b] Interpolations v0.12.10 [d96e819e] Parameters v0.12.3 ⌅ [b0e4dd01] RollingFunctions v0.6.2 ⌅ [90137ffa] StaticArrays v0.12.6 ⌅ [fd094767] Suppressor v0.1.1 [37e2e46d] LinearAlgebra [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_r0NhA9/Manifest.toml` ⌃ [13072b0f] AxisAlgorithms v1.0.1 [2d3116d5] Bridge v0.11.6 [46d747a0] BridgeSDEInference v0.3.2 ⌃ [d360d2e6] ChainRulesCore v1.19.1 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [bbf7d656] CommonSubexpressions v0.3.1 ⌅ [34da2185] Compat v2.2.1 [9a962f9c] DataAPI v1.16.0 ⌃ [864edb3b] DataStructures v0.17.20 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 ⌃ [b552c78f] DiffRules v1.14.0 ⌅ [31c24e10] Distributions v0.23.12 [ffbed154] DocStringExtensions v0.9.4 [e2ba6199] ExprTools v0.1.10 ⌅ [1a297f60] FillArrays v0.9.7 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [43dcc890] GaussianDistributions v0.3.3 [842dd82b] InlineStrings v1.4.3 ⌅ [a98d9a8b] Interpolations v0.12.10 [d8418881] Intervals v1.10.0 [3587e190] InverseFunctions v0.1.17 ⌅ [92d709cd] IrrationalConstants v0.1.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌃ [78c3b35d] Mocking v0.7.2 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌅ [90014a1f] PDMats v0.10.1 [d96e819e] Parameters v0.12.3 ⌅ [f27b6e38] Polynomials v2.0.25 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 ⌅ [79098fc4] Rmath v0.7.1 ⌅ [b0e4dd01] RollingFunctions v0.6.2 [6c6a2e73] Scratch v1.2.1 [a2af1166] SortingAlgorithms v1.2.1 ⌅ [276daf66] SpecialFunctions v0.10.3 ⌅ [90137ffa] StaticArrays v0.12.6 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [4c63d2b9] StatsFuns v0.9.18 ⌅ [fd094767] Suppressor v0.1.1 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.21.3 [2c80a279] Trajectories v0.2.2 [3a884ed6] UnPack v1.0.2 ⌅ [efce3f68] WoodburyMatrices v0.5.6 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] Rmath_jll v0.4.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `range(start, stop)` (with neither `length` nor `step` given) is deprecated, use `range(start, stop=stop)` instead. │ caller = broadcasted at broadcast.jl:1136 [inlined] └ @ Core ./broadcast.jl:1136 ┌ Warning: `range(start, stop)` (with neither `length` nor `step` given) is deprecated, use `range(start, stop=stop)` instead. │ caller = broadcasted at broadcast.jl:1136 [inlined] └ @ Core ./broadcast.jl:1136 WARNING: method definition for inv_solve! at /home/pkgeval/.julia/packages/BridgeSDEInference/azBnQ/src/stochastic_process/path_to_wiener.jl:10 declares type variable T but does not use it. Test Summary: | Pass Total Time change point between ODE solvers | 60 60 4.4s ┌ Warning: `range(start, stop)` (with neither `length` nor `step` given) is deprecated, use `range(start, stop=stop)` instead. │ caller = broadcasted at broadcast.jl:1136 [inlined] └ @ Core ./broadcast.jl:1136 blocking object: Error During Test at /home/pkgeval/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:34 Got exception outside of a @test MethodError: lu(::SMatrix{1, 1, Float64, 1}, ::Val{true}) is ambiguous. Candidates: lu(A::StaticMatrix, pivot::Union{Val{false}, Val{true}}; check) @ StaticArrays ~/.julia/packages/StaticArrays/WNOVH/src/lu.jl:33 lu(A::StaticMatrix{N, N}, pivot::Union{Val{false}, Val{true}}; check) where N @ StaticArrays ~/.julia/packages/StaticArrays/WNOVH/src/lu.jl:40 lu(A::AbstractMatrix, ::Val{true}; check) @ LinearAlgebra deprecated.jl:103 Possible fix, define lu(::StaticMatrix{N, N}, ::Val{true}) where N Stacktrace: [1] lu(A::SMatrix{1, 1, Float64, 1}) @ StaticArrays ~/.julia/packages/StaticArrays/WNOVH/src/lu.jl:40 [2] macro expansion @ ~/.julia/packages/StaticArrays/WNOVH/src/solve.jl:55 [inlined] [3] _solve @ ~/.julia/packages/StaticArrays/WNOVH/src/solve.jl:45 [inlined] [4] \ @ ~/.julia/packages/StaticArrays/WNOVH/src/solve.jl:1 [inlined] [5] initHHνc!(change_pt::NoChangePt, L::SMatrix{1, 2, Float64, 2}, Σ::SMatrix{1, 1, Float64, 1}, v::SVector{1, Float64}, H⁽ᵀ⁺⁾::SMatrix{2, 2, Float64, 4}, Hν⁽ᵀ⁺⁾::SVector{2, Float64}, c⁽ᵀ⁺⁾::Float64, H::Vector{SMatrix{2, 2, Float64, 4}}, Hν::Vector{SVector{2, Float64}}, c::Vector{Float64}, m::Int64) @ BridgeSDEInference ~/.julia/packages/BridgeSDEInference/azBnQ/src/stochastic_process/guid_prop_bridge.jl:165 [6] gpupdate!(t::Vector{Float64}, L::SMatrix{1, 2, Float64, 2}, Σ::SMatrix{1, 1, Float64, 1}, v::SVector{1, Float64}, H⁽ᵀ⁺⁾::SMatrix{2, 2, Float64, 4}, Hν⁽ᵀ⁺⁾::SVector{2, Float64}, c⁽ᵀ⁺⁾::Float64, H::Vector{SMatrix{2, 2, Float64, 4}}, Hν::Vector{SVector{2, Float64}}, c::Vector{Float64}, L̃::Vector{SMatrix{2, 2, Float64, 4}}, M̃⁺::Vector{SMatrix{2, 2, Float64, 4}}, μ::Vector{SVector{2, Float64}}, P::FitzhughDiffusionAux{Float64, Float64, Float64, Val{:regular}}, change_pt::NoChangePt, solver::Vern7) @ BridgeSDEInference ~/.julia/packages/BridgeSDEInference/azBnQ/src/stochastic_process/guid_prop_bridge.jl:215 [7] BridgeSDEInference.GuidPropBridge(::Type{Float64}, tt_::Vector{Float64}, P::FitzhughDiffusion{Float64, Val{:regular}}, Pt::FitzhughDiffusionAux{Float64, Float64, Float64, Val{:regular}}, L::SMatrix{1, 2, Float64, 2}, v::SVector{1, Float64}, Σ::SMatrix{1, 1, Float64, 1}, H⁽ᵀ⁺⁾::SMatrix{2, 2, Float64, 4}, Hν⁽ᵀ⁺⁾::SVector{2, Float64}, c⁽ᵀ⁺⁾::Float64; H⁻¹prot::SVector{4, Float64}, change_pt::NoChangePt, solver::Vern7, full_obs::Bool) @ BridgeSDEInference ~/.julia/packages/BridgeSDEInference/azBnQ/src/stochastic_process/guid_prop_bridge.jl:382 [8] blocking_test_prep(obs::Vector{SVector{1, Float64}}, tt::Vector{Float64}, knots::Vector{Int64}, change_pt_buffer::Int64) @ Main ~/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:22 [9] blocking_test_prep(obs::Vector{SVector{1, Float64}}, tt::Vector{Float64}) @ Main ~/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:5 [10] macro expansion @ ~/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:41 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [12] top-level scope @ ~/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:35 [13] include(fname::String) @ Base.MainInclude ./client.jl:494 [14] top-level scope @ ~/.julia/packages/BridgeSDEInference/azBnQ/test/runtests.jl:15 [15] include(fname::String) @ Base.MainInclude ./client.jl:494 [16] top-level scope @ none:6 [17] eval @ ./boot.jl:385 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [19] _start() @ Base ./client.jl:557 Test Summary: | Error Total Time blocking object | 1 1 14.0s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BridgeSDEInference/azBnQ/test/test_blocking.jl:34 in expression starting at /home/pkgeval/.julia/packages/BridgeSDEInference/azBnQ/test/runtests.jl:15 Testing failed after 114.72s ERROR: LoadError: Package BridgeSDEInference errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 257.9s: package tests unexpectedly errored