Package evaluation of BigBed on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T14:59:10.775 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.04s ################################################################################ # Installation # Installing BigBed... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [97aa930e] + BigBed v0.1.0 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌅ [67c07d97] + Automa v0.8.4 [19670fab] + BBI v0.2.1 ⌅ [8e4a8c10] + BED v0.1.1 [28d598bf] + BGZFStreams v0.3.2 [97aa930e] + BigBed v0.1.0 [37cfa864] + BioCore v2.0.5 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.9.1 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 ⌅ [53c48c17] + FixedPointNumbers v0.7.1 ⌅ [899a7d2d] + GenomicFeatures v2.1.0 ⌅ [4ffb77ac] + Indexes v0.1.3 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.7.0 [2ec943e9] + Libz v1.0.1 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.4.3 [69024149] + StringEncodings v0.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [ddb6d928] + YAML v0.4.14 [94ce4f54] + Libiconv_jll v1.18.0+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [56ddb016] + Logging [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [83775a58] + Zlib_jll v1.2.13+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 33.77s ################################################################################ # Testing # Testing BigBed Status `/tmp/jl_HCc9Rf/Project.toml` ⌅ [67c07d97] Automa v0.8.4 [19670fab] BBI v0.2.1 ⌅ [8e4a8c10] BED v0.1.1 [97aa930e] BigBed v0.1.0 [37cfa864] BioCore v2.0.5 [e1450e63] BufferedStreams v1.2.2 ⌅ [3da002f7] ColorTypes v0.9.1 [31c24e10] Distributions v0.25.120 ⌅ [53c48c17] FixedPointNumbers v0.7.1 [3372ea36] FormatSpecimens v1.3.1 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [2ec943e9] Libz v1.0.1 [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_HCc9Rf/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [67c07d97] Automa v0.8.4 [19670fab] BBI v0.2.1 ⌅ [8e4a8c10] BED v0.1.1 [28d598bf] BGZFStreams v0.3.2 [97aa930e] BigBed v0.1.0 [37cfa864] BioCore v2.0.5 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [944b1d66] CodecZlib v0.7.8 ⌅ [3da002f7] ColorTypes v0.9.1 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 ⌅ [53c48c17] FixedPointNumbers v0.7.1 [3372ea36] FormatSpecimens v1.3.1 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [4ffb77ac] Indexes v0.1.3 [524e6230] IntervalTrees v1.1.0 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ec943e9] Libz v1.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [69024149] StringEncodings v0.3.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [ddb6d928] YAML v0.4.14 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [de0858da] Printf [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time BigBed | 38 38 23.1s Testing BigBed tests passed Testing completed after 32.8s PkgEval succeeded after 86.99s