Package evaluation of BiGGReactions on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T16:07:11.973


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.24s


################################################################################
# Installation
#

Installing BiGGReactions...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [0f8c7381] + BiGGReactions v0.2.1
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [0f8c7381] + BiGGReactions v0.2.1
  [d1d4a3ce] + BitFlags v0.1.9
  [da1fd8a2] + CodeTracking v1.3.9
  [944b1d66] + CodecZlib v0.7.8
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.4
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [cd3eb016] + HTTP v1.10.16
  [eafb193a] + Highlights v0.5.3
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [e6f89c97] + LoggingExtras v1.1.0
  [739be429] + MbedTLS v1.1.9
  [1c23619d] + MyterialColors v0.3.0
  [4d8831e6] + OpenSSL v1.5.0
  [bac558e1] + OrderedCollections v1.8.1
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [33c8b6b6] + ProgressLogging v0.1.4
  [6c6a2e73] + Scratch v1.2.1
  [777ac1f9] + SimpleBufferStream v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [22787eb5] + Term v2.0.7
  [3bb67fe8] + TranscodingStreams v0.11.3
  [5c2747f8] + URIs v1.5.2
  [3a884ed6] + UnPack v1.0.2
  [1cfade01] + UnicodeFun v0.4.1
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [b77e0a4c] + InteractiveUtils
  [8f399da3] + Libdl
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [83775a58] + Zlib_jll v1.2.13+1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.86s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 70.48s


################################################################################
# Testing
#

     Testing BiGGReactions
      Status `/tmp/jl_bW8bTX/Project.toml`
  [0f8c7381] BiGGReactions v0.2.1
  [ffbed154] DocStringExtensions v0.9.4
  [cd3eb016] HTTP v1.10.16
  [682c06a0] JSON v0.21.4
  [6c6a2e73] Scratch v1.2.1
  [22787eb5] Term v2.0.7
  [9e88b42a] Serialization
  [8dfed614] Test
      Status `/tmp/jl_bW8bTX/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [0f8c7381] BiGGReactions v0.2.1
  [d1d4a3ce] BitFlags v0.1.9
  [da1fd8a2] CodeTracking v1.3.9
  [944b1d66] CodecZlib v0.7.8
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [ffbed154] DocStringExtensions v0.9.4
  [460bff9d] ExceptionUnwrapping v0.1.11
  [cd3eb016] HTTP v1.10.16
  [eafb193a] Highlights v0.5.3
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [e6f89c97] LoggingExtras v1.1.0
  [739be429] MbedTLS v1.1.9
  [1c23619d] MyterialColors v0.3.0
  [4d8831e6] OpenSSL v1.5.0
  [bac558e1] OrderedCollections v1.8.1
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [33c8b6b6] ProgressLogging v0.1.4
  [6c6a2e73] Scratch v1.2.1
  [777ac1f9] SimpleBufferStream v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [22787eb5] Term v2.0.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.5.2
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [458c3c95] OpenSSL_jll v3.5.0+0
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [b77e0a4c] InteractiveUtils
  [8f399da3] Libdl
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [83775a58] Zlib_jll v1.2.13+1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
 Cache cleared! Reactions: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:4
  Test threw exception
  Expression: rxn.id == "PFL"
  type Nothing has no field id
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:4 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:2
Reactions: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:5
  Test threw exception
  Expression: rxn.name == "Pyruvate formate lyase"
  type Nothing has no field name
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:5 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:2
Reactions: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:6
  Test threw exception
  Expression: length(rxn.metabolites) == 4
  type Nothing has no field metabolites
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:6 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/reactions.jl:2
Metabolites: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:4
  Test threw exception
  Expression: met.id == "h2o"
  type Nothing has no field id
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:4 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:2
Metabolites: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:5
  Test threw exception
  Expression: met.name == "H2O H2O"
  type Nothing has no field name
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:5 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:2
Metabolites: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:6
  Test threw exception
  Expression: met.charges == [0]
  type Nothing has no field charges
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:6 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:2
Metabolites: Error During Test at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:7
  Test threw exception
  Expression: met.formulas == ["H2O"]
  type Nothing has no field formulas
  Stacktrace:
   [1] getproperty(x::Nothing, f::Symbol)
     @ Base ./Base.jl:37
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:7 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
   [5] top-level scope
     @ ~/.julia/packages/BiGGReactions/DpoJK/test/metabolites.jl:2
Test Summary:    | Pass  Error  Total     Time
BiGGReactions.jl |    2      7      9  2m34.7s
  Reactions      |    1      3      4  1m18.2s
  Metabolites    |    1      4      5  1m12.5s
ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 7 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BiGGReactions/DpoJK/test/runtests.jl:4

Testing failed after 37.33s

ERROR: LoadError: Package BiGGReactions errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 257.88s: package tests unexpectedly errored