Package evaluation of BGEN on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T15:58:27.556


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.35s


################################################################################
# Installation
#

Installing BGEN...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [6db4b851] + BGEN v0.2.2
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [6db4b851] + BGEN v0.2.2
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [a10d1c49] + DBInterface v2.6.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.4
  [2447270c] + GeneticVariantBase v0.1.2
  [842dd82b] + InlineStrings v1.4.3
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [fdea26ae] + SIMD v3.7.1
  [0aa819cd] + SQLite v1.6.1
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [ea10d353] + WeakRefStrings v1.4.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [76ed43ae] + SQLite_jll v3.48.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [b77e0a4c] + InteractiveUtils
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [d6f4376e] + Markdown
  [de0858da] + Printf
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.91s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 20.25s


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# Testing
#

     Testing BGEN
      Status `/tmp/jl_PWwtT4/Project.toml`
  [6db4b851] BGEN v0.2.2
  [2447270c] GeneticVariantBase v0.1.2
  [de0858da] Printf
  [10745b16] Statistics v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_PWwtT4/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [6db4b851] BGEN v0.2.2
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [a10d1c49] DBInterface v2.6.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [ffbed154] DocStringExtensions v0.9.4
  [2447270c] GeneticVariantBase v0.1.2
  [842dd82b] InlineStrings v1.4.3
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [fdea26ae] SIMD v3.7.1
  [0aa819cd] SQLite v1.6.1
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [ea10d353] WeakRefStrings v1.4.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [76ed43ae] SQLite_jll v3.48.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [b77e0a4c] InteractiveUtils
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [de0858da] Printf
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary: | Pass  Total  Time
basics        |   32     32  7.9s
Test Summary: | Pass  Total  Time
getters       |   22     22  1.7s
Test Summary: | Pass  Total  Time
select_region |  485    485  7.5s
Test Summary: | Pass  Total  Time
index         |    9      9  1.3s
┌ Warning: Sample names unavailable. Do you have a separate '.sample' file?
└ @ BGEN ~/.julia/packages/BGEN/KN7mm/src/sample.jl:7
Test Summary: |  Pass  Total  Time
example files | 42601  42601  6.6s
┌ Warning: Sample names unavailable. Do you have a separate '.sample' file?
└ @ BGEN ~/.julia/packages/BGEN/KN7mm/src/sample.jl:7
Test Summary:       | Pass  Total  Time
minor allele dosage | 1216   1216  2.8s
Test Summary: | Pass  Total  Time
utils         |  199    199  0.5s
Test Summary: | Pass  Total  Time
filter        | 1534   1534  2.3s
     Testing BGEN tests passed 

Testing completed after 73.51s

PkgEval succeeded after 111.61s