Package evaluation of AdvancedHMC on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T17:43:33.128 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.25s ################################################################################ # Installation # Installing AdvancedHMC... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [0bf59076] + AdvancedHMC v0.8.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [80f14c24] + AbstractMCMC v5.6.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [0bf59076] + AdvancedHMC v0.8.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [28d57a85] + Transducers v0.4.84 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 9.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 909.56s ################################################################################ # Testing # Testing AdvancedHMC Status `/tmp/jl_3gsQv1/Project.toml` [47edcb42] ADTypes v1.14.0 [80f14c24] AbstractMCMC v5.6.2 [0bf59076] AdvancedHMC v0.8.0 [4c88cf16] Aqua v0.8.13 [76274a88] Bijectors v0.15.7 [863f3e99] Comonicon v1.0.8 [b0b7db55] ComponentArrays v0.15.27 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.13.0 ⌃ [f6369f11] ForwardDiff v0.10.38 ⌅ [c3a54625] JET v0.9.18 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.0 [c7f686f2] MCMCChains v7.1.0 [1dea7af3] OrdinaryDiffEq v6.98.0 [91a5bcdd] Plots v1.40.13 [e0db7c4e] ReTest v0.3.4 [efcf1570] Setfield v1.1.2 [b8865327] UnicodePlots v3.7.2 ⌃ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra [44cfe95a] Pkg v1.10.0 [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_3gsQv1/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.6.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [0bf59076] AdvancedHMC v0.8.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [76274a88] Bijectors v0.15.7 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [082447d4] ChainRules v1.72.4 [d360d2e6] ChainRulesCore v1.25.1 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [863f3e99] Comonicon v1.0.8 [34da2185] Compat v4.16.0 [b0b7db55] ComponentArrays v0.15.27 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [5218b696] Configurations v0.17.6 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.175.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.11 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.9.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.2 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌃ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.16 [c145ed77] GenericSchur v0.5.5 [c27321d9] Glob v1.3.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.16 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.14 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [bd334432] InlineTest v0.2.0 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.18 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 ⌅ [aa1ae85d] JuliaInterpreter v0.9.46 ⌅ [70703baa] JuliaSyntax v0.4.10 [63c18a36] KernelAbstractions v0.9.34 [5ab0869b] KernelDensity v0.6.9 [ba0b0d4f] Krylov v0.10.1 [929cbde3] LLVM v9.4.0 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.17.0 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 ⌃ [6f1432cf] LoweredCodeUtils v3.2.2 [c7f686f2] MCMCChains v7.1.0 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.1 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [299715c1] MarchingCubes v0.1.11 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [8913a72c] NonlinearSolve v4.9.0 [be0214bd] NonlinearSolveBase v1.12.0 [5959db7a] NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.98.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.5.1 [bbf590c4] OrdinaryDiffEqCore v1.26.0 [50262376] OrdinaryDiffEqDefault v1.4.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.9.1 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Environment variables for testing PYTHON= LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin JULIA_CPU_THREADS=1 JULIA_NUM_PRECOMPILE_TASKS=1 DISPLAY=:1 PKGEVAL=true OPENBLAS_NUM_THREADS=1 CI=true JULIA_PKG_PRECOMPILE_AUTO=0 JULIA_PKGEVAL=true JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia: JULIA_NUM_THREADS=1 R_HOME=* HOME=/home/pkgeval OPENBLAS_MAIN_FREE=1 JULIA_LOAD_PATH=@:/tmp/jl_3gsQv1 ┌ Warning: `@lookup(mod, frame, node)` at /home/pkgeval/.julia/packages/JET/sQkqi/src/toplevel/virtualprocess.jl:1321 is deprecated, use `lookup(frame, node)` instead. └ @ JuliaInterpreter ~/.julia/packages/JuliaInterpreter/ZNccU/src/interpret.jl:46 WARNING: using deprecated binding Distributions.MatrixReshaped in Bijectors. , use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. WARNING: Bijectors.MatrixReshaped is deprecated, use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. likely near /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/quality.jl:7 Test Summary: | Pass Total Time Aqua | 11 11 46.3s Test Summary: | Pass Total Time JET | 1 1 2m07.2s WARNING: Method definition runtests(Any...) in module Main at /home/pkgeval/.julia/packages/InlineTest/NAAjm/src/InlineTest.jl:80 overwritten at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/runtests.jl:36. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.runtests), Any...) in module Main at /home/pkgeval/.julia/packages/InlineTest/NAAjm/src/InlineTest.jl:80 overwritten at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/runtests.jl:36. Pass Main: Metric | 5 Sample momentum variables from metric via vector of RNGs | 2 Resize metric | 3 Hamiltonian | 1 PhasePoint | 6 Energy | 120 Energy with ComponentArrays | 180 ┌ Info: Performance of loop of step() v.s. step() │ n_steps = 10 │ t_step_loop = 0.369896359 │ t_step = 0.014880224 └ t_step_loop / t_step = 24.858252066635558 Integrator | 35 step | 2 jitter | 14 Leapfrog | 6 JitteredLeapfrog | 8 update_nom_step_size | 8 Leapfrog | 4 JitteredLeapfrog | 4 temper | 7 Analytical solution to Eq (2.11) of Neal (2011) | 4 Trajectory | 247 Passing RNG | 12 TreeSampler | 5 TerminationCriterion | 2 Termination | 20 BinaryTree | 4 ClassicNoUTurn | 204 seed = 69 | 51 seed = 6 | 51 seed = 94 | 51 seed = 139 | 51 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 0.8 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.8 [ Info: Found initial step size 0.8 [ Info: Found initial step size 0.025 [ Info: Found initial step size 0.025 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 3.2 [ Info: Found initial step size 3.2 Adaptation | 62 Online v.s. naive v.s. true var/cov estimation | 12 MassMatrixAdaptor constructors | 2 Stan HMC adaptors | 12 buffer > `n_adapts` | 0 Adapted mass v.s. true variance | 20 DiagEuclideanMetric | 10 DenseEuclideanMetric | 10 Initialisation adaptor by metric | 2 Deprecation | 14 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 406 running 1 of 1 signal (10): User defined signal 1 _new_array_ at /source/src/array.c:105 _new_array at /source/src/array.c:198 [inlined] ijl_alloc_array_1d at /source/src/array.c:436 Array at ./boot.jl:477 [inlined] Array at ./boot.jl:486 [inlined] Array at ./boot.jl:494 [inlined] similar at ./abstractarray.jl:876 [inlined] similar at ./abstractarray.jl:875 [inlined] similar at ./broadcast.jl:224 [inlined] similar at ./broadcast.jl:223 [inlined] copy at ./broadcast.jl:928 [inlined] materialize at ./broadcast.jl:903 [inlined] broadcast_preserving_zero_d at ./broadcast.jl:892 [inlined] - at ./abstractarraymath.jl:218 isterminated at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:547 isterminated at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:614 [inlined] build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:660 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:642 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:642 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:647 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:642 transition at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:688 transition at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:57 macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:185 [inlined] macro expansion at ./timing.jl:395 [inlined] #sample#26 at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:183 sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:160 [inlined] #sample#25 at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:122 [inlined] sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:110 [inlined] sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:110 unknown function (ip: 0x72676b1840f9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:101 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:100 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:99 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:72 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:67 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:61 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:56 [inlined] top-level scope at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] #80 at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154 unknown function (ip: 0x72676baa7225) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 #invokelatest#2 at ./essentials.jl:892 [inlined] invokelatest at ./essentials.jl:889 [inlined] #153 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:425 [inlined] run_work_thunk at /source/usr/share/julia/stdlib/v1.10/Distributed/src/process_messages.jl:70 unknown function (ip: 0x72676baa647e) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #remotecall_fetch#158 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:450 remotecall_fetch at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:449 [inlined] #remotecall_fetch#162 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:492 [inlined] remotecall_fetch at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:492 [inlined] #78 at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 unknown function (ip: 0x72676baa3e42) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x77de93fd9250) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x77de93fd1bdd) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x77de93fd16d0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x77de93fd0f90) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x77de93fcd689) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77de94dee249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000077de87800010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [406] signal (15): Terminated in expression starting at none:1 _new_array_ at /source/src/array.c:134 _new_array at /source/src/array.c:198 [inlined] ijl_alloc_array_1d at /source/src/array.c:436 Array at ./boot.jl:477 [inlined] Array at ./boot.jl:486 [inlined] Array at ./boot.jl:494 [inlined] similar at ./abstractarray.jl:876 [inlined] similar at ./abstractarray.jl:875 [inlined] similar at ./broadcast.jl:224 [inlined] similar at ./broadcast.jl:223 [inlined] copy at ./broadcast.jl:928 [inlined] materialize at ./broadcast.jl:903 [inlined] neg_energy at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/hamiltonian.jl:158 phasepoint at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/hamiltonian.jl:103 [inlined] #step#9 at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/integrator.jl:243 step at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/integrator.jl:208 [inlined] sample_phasepoint at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:366 transition at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/trajectory.jl:271 transition at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:57 macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:185 [inlined] macro expansion at ./timing.jl:395 [inlined] #sample#26 at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:183 sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:160 [inlined] #sample#25 at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:122 [inlined] sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:110 [inlined] sample at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/src/sampler.jl:110 unknown function (ip: 0x72676b19d0a9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:101 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:100 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:99 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:72 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:67 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:529 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:61 [inlined] macro expansion at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/testset.jl:670 [inlined] macro expansion at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/sampler.jl:56 [inlined] top-level scope at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] #80 at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154 unknown function (ip: 0x72676baa7225) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 #invokelatest#2 at ./essentials.jl:892 [inlined] invokelatest at ./essentials.jl:889 [inlined] #153 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:425 [inlined] run_work_thunk at /source/usr/share/julia/stdlib/v1.10/Distributed/src/process_messages.jl:70 unknown function (ip: 0x72676baa647e) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #remotecall_fetch#158 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:450 remotecall_fetch at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:449 [inlined] #remotecall_fetch#162 at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:492 [inlined] remotecall_fetch at /source/usr/share/julia/stdlib/v1.10/Distributed/src/remotecall.jl:492 [inlined] #78 at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 unknown function (ip: 0x72676baa3e42) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 773110628 (Pool: 772977889; Big: 132739); GC: 764 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 #1058 at ./Base.jl:608 jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 18137023 (Pool: 18094766; Big: 42257); GC: 15 PkgEval terminated after 2729.55s: test duration exceeded the time limit