Package evaluation of XAM on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:47:28.716


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 3.98s


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# Installation
#

Installing XAM...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [d759349c] + XAM v0.4.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [67c07d97] + Automa v1.1.0
  [28d598bf] + BGZFStreams v0.3.2
  [00701ae9] + BioAlignments v3.1.0
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.1.3
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.16.0
  [864edb3b] + DataStructures v0.18.20
⌅ [899a7d2d] + GenomicFeatures v2.1.0
⌅ [4ffb77ac] + Indexes v0.1.3
  [524e6230] + IntervalTrees v1.1.0
  [bac558e1] + OrderedCollections v1.8.0
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [fdea26ae] + SIMD v3.7.1
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [7200193e] + Twiddle v1.1.2
  [d759349c] + XAM v0.4.0
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [b77e0a4c] + InteractiveUtils
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [de0858da] + Printf
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.02s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 38.74s


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# Testing
#

     Testing XAM
      Status `/tmp/jl_icoXLc/Project.toml`
  [67c07d97] Automa v1.1.0
  [28d598bf] BGZFStreams v0.3.2
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.4.1
  [e30172f5] Documenter v1.8.1
  [3372ea36] FormatSpecimens v1.3.1
⌅ [899a7d2d] GenomicFeatures v2.1.0
⌅ [4ffb77ac] Indexes v0.1.3
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [d759349c] XAM v0.4.0
  [de0858da] Printf
  [8dfed614] Test
      Status `/tmp/jl_icoXLc/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [1520ce14] AbstractTrees v0.4.5
  [67c07d97] Automa v1.1.0
  [28d598bf] BGZFStreams v0.3.2
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.4.1
  [3c28c6f8] BioSymbols v5.1.3
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.16.0
  [864edb3b] DataStructures v0.18.20
  [ffbed154] DocStringExtensions v0.9.3
  [e30172f5] Documenter v1.8.1
  [3372ea36] FormatSpecimens v1.3.1
⌅ [899a7d2d] GenomicFeatures v2.1.0
  [d7ba0133] Git v1.3.1
  [b5f81e59] IOCapture v0.2.5
⌅ [4ffb77ac] Indexes v0.1.3
  [524e6230] IntervalTrees v1.1.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [0e77f7df] LazilyInitializedFields v1.3.0
  [d0879d2d] MarkdownAST v0.1.2
  [bac558e1] OrderedCollections v1.8.0
  [69de0a69] Parsers v2.8.1
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [2792f1a3] RegistryInstances v0.1.0
  [fdea26ae] SIMD v3.7.1
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [7200193e] Twiddle v1.1.2
  [d759349c] XAM v0.4.0
  [2e619515] Expat_jll v2.6.5+0
  [f8c6e375] Git_jll v2.47.1+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [efcefdf7] PCRE2_jll v10.42.0+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master".
│ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error.
│ Unless this is due to a configuration error, the relevant variable should be set explicitly.
└ @ Documenter ~/.julia/packages/Documenter/iwb7N/src/utilities/utilities.jl:651
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
[ Info: Skipped ExpandTemplates step (doctest only).
[ Info: Skipped CrossReferences step (doctest only).
[ Info: Skipped CheckDocument step (doctest only).
[ Info: Skipped Populate step (doctest only).
[ Info: Skipped RenderDocument step (doctest only).
Test Summary: | Pass  Total   Time
XAM           |  371    371  44.6s
     Testing XAM tests passed 

Testing completed after 61.69s

PkgEval succeeded after 165.64s