Package evaluation of WiSER on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T11:52:01.609 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.1s ################################################################################ # Installation # Installing WiSER... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [2ff19380] + WiSER v0.2.6 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [6e4b80f9] + BenchmarkTools v1.6.0 [324d7699] + CategoricalArrays v0.10.8 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.27 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.7.2 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [b8f27783] + MathOptInterface v1.37.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [2ff19380] + WiSER v0.2.6 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [079eb43e] + NLopt_jll v2.10.0+0 ⌅ [656ef2d0] + OpenBLAS32_jll v0.3.24+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [9abbd945] + Profile [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 133.05s ################################################################################ # Testing # Testing WiSER Status `/tmp/jl_7M22Fi/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.117 [b6b21f68] Ipopt v1.7.2 [b8f27783] MathOptInterface v1.37.0 ⌅ [76087f3c] NLopt v0.6.5 [189a3867] Reexport v1.2.2 [f2b01f46] Roots v2.2.5 [276daf66] SpecialFunctions v2.5.0 [2913bbd2] StatsBase v0.34.4 [3eaba693] StatsModels v0.7.4 [bd369af6] Tables v1.12.0 [2ff19380] WiSER v0.2.6 [b77e0a4c] InteractiveUtils [37e2e46d] LinearAlgebra [de0858da] Printf [9abbd945] Profile [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_7M22Fi/Manifest.toml` [7d9f7c33] Accessors v0.1.41 [66dad0bd] AliasTables v1.1.3 [6e4b80f9] BenchmarkTools v1.6.0 [324d7699] CategoricalArrays v0.10.8 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v0.10.38 [34004b35] HypergeometricFunctions v0.3.27 [842dd82b] InlineStrings v1.4.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [b6b21f68] Ipopt v1.7.2 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [b8f27783] MathOptInterface v1.37.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.4 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.5 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [2ff19380] WiSER v0.2.6 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.12.0+0 [9cc047cb] Ipopt_jll v300.1400.1700+0 [d00139f3] METIS_jll v5.1.3+0 [d7ed1dd3] MUMPS_seq_jll v500.700.301+0 [079eb43e] NLopt_jll v2.10.0+0 ⌅ [656ef2d0] OpenBLAS32_jll v0.3.24+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [319450e9] SPRAL_jll v2024.5.8+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time WSVarLmmModel Constructor | 1 1 3.1s Test Summary: | Pass Total Time Simulating Response | 9 9 21.5s [ Info: Normal Normal LogNormal Test [ Info: generate data ---------- solver = Ipopt.Optimizer ├ ObjectiveSense: FEASIBILITY_SENSE ├ ObjectiveFunctionType: MOI.ScalarAffineFunction{Float64} ├ NumberOfVariables: 0 └ NumberOfConstraints: 0 ---------- [ Info: init_ls! 2.674627 seconds (414.55 k allocations: 26.695 MiB, 3.88% gc time, 99.34% compilation time) β 5×2 Matrix{Float64}: 0.1 0.039096 6.5 6.50141 -3.5 -3.51825 1.0 0.999684 5.0 5.00397 τ 5×2 Matrix{Float64}: -5.5 -4.66554 1.5 1.53484 -0.5 -0.667352 0.0 0.427926 0.0 -0.256984 Lγω 3×3 Matrix{Float64}: 1.22952 0.0 0.0 0.370895 0.915188 0.0 0.201548 0.0835276 0.691398 3×3 Matrix{Float64}: 1.22474 0.0 0.0 0.408248 0.912871 0.0 0.244949 0.109545 0.654217 [ Info: unweighted obj/gradient/hessian at init_ls nlsv_obj!(vlmm, true, true, true) = 2.7212682155670533e6 [ Info: init_mom! ****************************************************************************** This program contains Ipopt, a library for large-scale nonlinear optimization. Ipopt is released as open source code under the Eclipse Public License (EPL). For more information visit https://github.com/coin-or/Ipopt ****************************************************************************** 6.301667 seconds (529.48 k allocations: 35.350 MiB, 75.91% compilation time) β 5×2 Matrix{Float64}: 0.1 0.039096 6.5 6.50141 -3.5 -3.51825 1.0 0.999684 5.0 5.00397 τ 5×2 Matrix{Float64}: -5.5 -6.37668 1.5 2.16802 -0.5 -0.601975 0.0 0.513995 0.0 -0.355746 Lγω 3×3 Matrix{Float64}: 1.22929 0.0 0.0 0.372271 0.912264 0.0 0.201229 0.0857055 0.689916 3×3 Matrix{Float64}: 1.22474 0.0 0.0 0.408248 0.912871 0.0 0.244949 0.109545 0.654217 [ Info: weighted obj/gradient/hessian at init_ls nlsv_obj!(vlmm, true, true, true) = 360334.4607242447 ∇: 11-element Vector{Float64}: 3247.844138580239 406.1814390090952 -2146.13761715726 5839.40725841017 -3110.586405829378 14.456611543334775 28.114089555539696 -8.17210706969222 11.396201167402815 -104.83121022015075 102.57901113959097 [ Info: WNLS fitting run = 1, ‖Δβ‖ = 0.033037, ‖Δτ‖ = 0.667223, ‖ΔL‖ = 0.032525, status = LOCALLY_SOLVED, time(s) = 0.424930 run = 2, ‖Δβ‖ = 0.000697, ‖Δτ‖ = 0.052290, ‖ΔL‖ = 0.000818, status = LOCALLY_SOLVED, time(s) = 0.367970 5.745449 seconds (1.53 M allocations: 100.564 MiB, 1.15% gc time, 85.54% compilation time) [ Info: obj at solution nlsv_obj!(vlmm, true, true) = 555324.132323718 [ Info: estimates at solution β 5×2 Matrix{Float64}: 0.1 0.0669283 6.5 6.49983 -3.5 -3.50038 1.0 1.00027 5.0 5.00057 τ 5×2 Matrix{Float64}: -5.5 -4.98852 1.5 1.51402 -0.5 -0.493317 0.0 -0.0224114 0.0 -0.0102643 Lγω 3×3 Matrix{Float64}: 1.22198 0.0 0.0 0.356652 0.915144 0.0 0.201278 0.10848 0.67852 3×3 Matrix{Float64}: 1.22474 0.0 0.0 0.408248 0.912871 0.0 0.244949 0.109545 0.654217 [ Info: inference at solution Within-subject variance estimation by robust regression (WiSER) Mean Formula: y ~ x1 + x2 + x3 + x4 + x5 Random Effects Formula: y ~ z1 + z2 + z3 Within-Subject Variance Formula: y ~ w1 + w2 + w3 + w4 + w5 Number of individuals/clusters: 1000 Total observations: 20000 Fixed-effects parameters: ─────────────────────────────────────────────── Estimate Std. Error Z Pr(>|Z|) ─────────────────────────────────────────────── x1 0.0669283 0.0351797 1.90 0.0571 x2 6.49983 0.000435584 14922.11 <1e-99 x3 -3.50038 0.000428781 -8163.56 <1e-99 x4 1.00027 0.0004035 2478.97 <1e-99 x5 5.00057 0.000428979 11656.91 <1e-99 w1 -4.98852 0.0485726 -102.70 <1e-99 w2 1.51402 0.0226343 66.89 <1e-99 w3 -0.493317 0.0232893 -21.18 <1e-98 w4 -0.0224114 0.0239397 -0.94 0.3492 w5 -0.0102643 0.024824 -0.41 0.6793 ─────────────────────────────────────────────── Random effects covariance matrix Σγ: "z1" 1.49323 0.435821 0.245958 "z2" 0.435821 0.964688 0.171061 "z3" 0.245958 0.171061 0.51267 Test Summary: | Pass Total Time fit! (start from LS fit) | 1 1 58.8s Testing WiSER tests passed Testing completed after 152.71s PkgEval succeeded after 306.03s