Package evaluation of Watershed on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:17:54.728 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.25s ################################################################################ # Installation # Installing Watershed... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [adaf3d07] + Watershed v0.7.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [ffbed154] + DocStringExtensions v0.9.3 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [adaf3d07] + Watershed v0.7.0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 12.37s ################################################################################ # Testing # Testing Watershed Status `/tmp/jl_b9hbK6/Project.toml` [864edb3b] DataStructures v0.18.20 ⌅ [2913bbd2] StatsBase v0.33.21 [adaf3d07] Watershed v0.7.0 [8dfed614] Test Status `/tmp/jl_b9hbK6/Manifest.toml` [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [ffbed154] DocStringExtensions v0.9.3 [92d709cd] IrrationalConstants v0.2.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [a2af1166] SortingAlgorithms v1.2.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [adaf3d07] Watershed v0.7.0 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [ca575930] NetworkOptions v1.2.0 [de0858da] Printf [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [4536629a] OpenBLAS_jll v0.3.23+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: use percentage threshold: low 0.1, high 0.8, thresholds Tuple{Int64, Float32}[(800, 0.2)] [ Info: absolute watershed threshold: low: 0.099836, high: 0.799728, thresholds: Tuple{Int64, Float32}[(800, 0.199336)], dust: 600 steepestascent... divideplateaus... findbasins! found: 32455 components regiongraph... Region graph size: 170675 use region graph construction code > julia 0.4 mergeregions... ┌ Warning: `find_root` is deprecated, use `find_root!` instead. │ caller = mergeregions!(seg::Array{UInt32, 3}, rg::Vector{Tuple{Float32, UInt32, UInt32}}, counts::Vector{Int64}, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64) at mergeregions.jl:27 └ @ Watershed ~/.julia/packages/Watershed/0bl9y/src/mergeregions.jl:27 ERROR: LoadError: MethodError: no method matching find_root!(::DataStructures.IntDisjointSets{Int64}, ::UInt32) Closest candidates are: find_root!(!Matched::DataStructures.DisjointSets{T}, ::T) where T @ DataStructures ~/.julia/packages/DataStructures/95DJa/src/disjoint_set.jl:198 find_root!(::DataStructures.IntDisjointSets{T}, !Matched::T) where T<:Integer @ DataStructures ~/.julia/packages/DataStructures/95DJa/src/disjoint_set.jl:72 Stacktrace: [1] find_root(::DataStructures.IntDisjointSets{Int64}, ::Vararg{Any}; kwargs::@Kwargs{}) @ DataStructures ./deprecated.jl:116 [2] find_root(::DataStructures.IntDisjointSets{Int64}, ::Vararg{Any}) @ DataStructures ./deprecated.jl:113 [3] mergeregions!(seg::Array{UInt32, 3}, rg::Vector{Tuple{Float32, UInt32, UInt32}}, counts::Vector{Int64}, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64) @ Watershed ~/.julia/packages/Watershed/0bl9y/src/mergeregions.jl:27 [4] _baseseg(aff::Array{Float32, 4}; low::Float32, high::Float32, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64, is_threshold_relative::Bool) @ Watershed ~/.julia/packages/Watershed/0bl9y/src/segment.jl:54 [5] _baseseg @ ~/.julia/packages/Watershed/0bl9y/src/segment.jl:34 [inlined] [6] #watershed#9 @ ~/.julia/packages/Watershed/0bl9y/src/segment.jl:76 [inlined] [7] top-level scope @ ~/.julia/packages/Watershed/0bl9y/test/runtests.jl:17 [8] include(fname::String) @ Base.MainInclude ./client.jl:494 [9] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/Watershed/0bl9y/test/runtests.jl:17 Testing failed after 20.91s ERROR: LoadError: Package Watershed errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 49.51s: package tests unexpectedly errored