Package evaluation of SpectralIndices on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:14:12.436 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.2s ################################################################################ # Installation # Installing SpectralIndices... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [df0093a1] + SpectralIndices v0.2.13 Updating `~/.julia/environments/v1.10/Manifest.toml` [34da2185] + Compat v4.16.0 [682c06a0] + JSON v0.21.4 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [df0093a1] + SpectralIndices v0.2.13 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [deac9b47] + LibCURL_jll v8.4.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.52.0+1 Installation completed after 6.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: YAXArrays Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.10/YAXArrays/jl_mPoGVz". ERROR: LoadError: UndefVarError: `ChunkType` not defined Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:31 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:495 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:495 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [8] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:4 SpectralIndicesYAXArraysExt Failed to precompile SpectralIndicesYAXArraysExt [39118e20-fad3-577b-93ec-6bc0e3e7d91f] to "/home/pkgeval/.julia/compiled/v1.10/SpectralIndicesYAXArraysExt/jl_tTyidP". ERROR: LoadError: UndefVarError: `ChunkType` not defined Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:31 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:495 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:495 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [8] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.10/YAXArrays/jl_HtX2HY". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/ext/SpectralIndicesYAXArraysExt.jl:1 in expression starting at stdin:4 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 113.79s ################################################################################ # Testing # Testing SpectralIndices Status `/tmp/jl_mgNK7w/Project.toml` [4c88cf16] Aqua v0.8.11 [861a8166] Combinatorics v1.0.2 [34da2185] Compat v4.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [0703355e] DimensionalData v0.28.5 [c3a54625] JET v0.9.18 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v1.0.62 [1bc83da4] SafeTestsets v0.1.0 [df0093a1] SpectralIndices v0.2.13 [2913bbd2] StatsBase v0.34.4 ⌅ [c21b50f5] YAXArrays v0.5.14 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_mgNK7w/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.2.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [4fba245c] ArrayInterface v7.18.0 [13072b0f] AxisAlgorithms v1.1.0 [179af706] CFTime v0.1.4 [00ebfdb7] CSTParser v3.4.3 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.6 [861a8166] Combinatorics v1.0.2 [a80b9123] CommonMark v0.8.15 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [0703355e] DimensionalData v0.28.5 [fcd2136c] DiskArrayTools v0.1.12 [3c3547ce] DiskArrays v0.4.10 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [411431e0] Extents v0.1.5 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [c27321d9] Glob v1.3.1 [34004b35] HypergeometricFunctions v0.3.27 [842dd82b] InlineStrings v1.4.3 [85a1e053] Interfaces v0.3.2 [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.10 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.9.18 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v1.0.62 [aa1ae85d] JuliaInterpreter v0.9.41 [70703baa] JuliaSyntax v0.4.10 [8ac3fa9e] LRUCache v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.15.0 [a15396b6] OnlineStats v1.7.1 [925886fa] OnlineStatsBase v1.7.1 [429524aa] Optim v1.11.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [fad6cfc8] ParallelUtilities v0.8.6 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.1 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [df0093a1] SpectralIndices v0.2.13 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [0796e94c] Tokenize v0.5.29 [3a884ed6] UnPack v1.0.2 [bbac0a1f] WeightedOnlineStats v0.6.3 [efce3f68] WoodburyMatrices v1.0.0 [90b8fcef] YAXArrayBase v0.7.5 ⌅ [c21b50f5] YAXArrays v0.5.14 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Quality Assurance | 6 6 57.9s ERROR: LoadError: UndefVarError: `ChunkType` not defined Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:31 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:495 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:495 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [8] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:4 YAXArrays datasets: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.10/YAXArrays/jl_OGiEFA". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include(mod::Module, _path::String) @ Base ./Base.jl:495 [24] include(x::String) @ Main.var"##YAXArrays datasets#228" ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [25] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:24 [inlined] [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [27] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:24 [28] eval(m::Module, e::Any) @ Core ./boot.jl:385 [29] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [30] macro expansion @ ~/.julia/packages/SpectralIndices/dyBnp/test/runtests.jl:11 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [32] top-level scope @ ~/.julia/packages/SpectralIndices/dyBnp/test/runtests.jl:9 [33] include(fname::String) @ Base.MainInclude ./client.jl:494 [34] top-level scope @ none:6 [35] eval @ ./boot.jl:385 [inlined] [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [37] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/test/YAXArrays/datasets.jl:3 Test Summary: | Pass Error Total Time Utils | 13 1 14 2m07.2s General utils | 10 10 5.1s DataFrames datasets | 3 3 1m30.3s YAXArrays datasets | 1 1 31.7s ERROR: LoadError: Some tests did not pass: 13 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/test/runtests.jl:8 Testing failed after 192.39s ERROR: LoadError: Package SpectralIndices errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 324.81s: package fails to precompile