Package evaluation of SoilPlantAirContinuum on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T11:16:30.786 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.86s ################################################################################ # Installation # Installing SoilPlantAirContinuum... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [2d76e174] + SoilPlantAirContinuum v0.3.2 Updating `~/.julia/environments/v1.10/Manifest.toml` [179af706] + CFTime v0.1.4 [7d47ec4b] + CanopyRadiativeTransfer v0.2.3 [781d2db2] + ClimaCache v1.1.8 [1fbeeb36] + CommonDataModel v0.3.7 [34da2185] + Compat v4.16.0 [7e2492bd] + ConstrainedRootSolvers v0.1.5 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [f1e47f7f] + EmeraldConstants v0.1.0 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [d155caf3] + LeafOptics v0.3.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [e1d29d7a] + Missings v1.2.0 [6a36f34d] + NetcdfIO v0.2.9 [bac558e1] + OrderedCollections v1.8.0 [537ec7c9] + Photosynthesis v0.4.6 [0d262f2c] + PkgUtility v0.2.1 [d6acb6ec] + PlantHydraulics v0.4.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a476b75e] + SoilHydraulics v0.2.4 [2d76e174] + SoilPlantAirContinuum v0.3.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [5fa394f2] + StomataModels v0.3.2 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3a884ed6] + UnPack v1.0.2 [20dd5ee6] + WaterPhysics v0.1.5 [0b7ba130] + Blosc_jll v1.21.6+2 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.6+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 38.07s ################################################################################ # Testing # Testing SoilPlantAirContinuum Status `/tmp/jl_vwYp9p/Project.toml` [7d47ec4b] CanopyRadiativeTransfer v0.2.3 [781d2db2] ClimaCache v1.1.8 [f1e47f7f] EmeraldConstants v0.1.0 [d155caf3] LeafOptics v0.3.4 [537ec7c9] Photosynthesis v0.4.6 [d6acb6ec] PlantHydraulics v0.4.3 [a476b75e] SoilHydraulics v0.2.4 [2d76e174] SoilPlantAirContinuum v0.3.2 [5fa394f2] StomataModels v0.3.2 [3a884ed6] UnPack v1.0.2 [20dd5ee6] WaterPhysics v0.1.5 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_vwYp9p/Manifest.toml` [179af706] CFTime v0.1.4 [7d47ec4b] CanopyRadiativeTransfer v0.2.3 [781d2db2] ClimaCache v1.1.8 [1fbeeb36] CommonDataModel v0.3.7 [34da2185] Compat v4.16.0 [7e2492bd] ConstrainedRootSolvers v0.1.5 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.3 [f1e47f7f] EmeraldConstants v0.1.0 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [d155caf3] LeafOptics v0.3.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [e1d29d7a] Missings v1.2.0 [6a36f34d] NetcdfIO v0.2.9 [bac558e1] OrderedCollections v1.8.0 [537ec7c9] Photosynthesis v0.4.6 [0d262f2c] PkgUtility v0.2.1 [d6acb6ec] PlantHydraulics v0.4.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [91c51154] SentinelArrays v1.4.8 [a476b75e] SoilHydraulics v0.2.4 [2d76e174] SoilPlantAirContinuum v0.3.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [5fa394f2] StomataModels v0.3.2 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3a884ed6] UnPack v1.0.2 [20dd5ee6] WaterPhysics v0.1.5 [0b7ba130] Blosc_jll v1.21.6+2 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+0 [f1f71cc9] MPItrampoline_jll v5.5.2+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] OpenMPI_jll v4.1.6+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Core Function: Error During Test at /home/pkgeval/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:7 Got exception outside of a @test type RootHydraulics has no field SH Stacktrace: [1] getproperty @ ./Base.jl:37 [inlined] [2] unpack @ ~/.julia/packages/UnPack/EkESO/src/UnPack.jl:34 [inlined] [3] macro expansion @ ~/.julia/packages/UnPack/EkESO/src/UnPack.jl:101 [inlined] [4] xylem_pressure_profile!(hs::ClimaCache.RootHydraulics{Float32}, mode::ClimaCache.SteadyStateFlow{Float32}, T::Float32; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:320 [5] xylem_pressure_profile!(organ::ClimaCache.Root{Float32}; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:219 [6] xylem_pressure_profile!(spac::ClimaCache.MonoMLGrassSPAC{Float32}; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:534 [7] xylem_pressure_profile! @ ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:523 [inlined] [8] soil_plant_air_continuum!(spac::ClimaCache.MonoMLGrassSPAC{Float32}, δt::Float32; update::Bool, θ_on::Bool) @ SoilPlantAirContinuum ~/.julia/packages/SoilPlantAirContinuum/lZiSo/src/model.jl:48 [9] soil_plant_air_continuum!(spac::ClimaCache.MonoMLGrassSPAC{Float32}, δt::Float32) @ SoilPlantAirContinuum ~/.julia/packages/SoilPlantAirContinuum/lZiSo/src/model.jl:43 [10] macro expansion @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:12 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [12] macro expansion @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:8 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [14] top-level scope @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:7 [15] include(fname::String) @ Base.MainInclude ./client.jl:494 [16] top-level scope @ none:6 [17] eval @ ./boot.jl:385 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [19] _start() @ Base ./client.jl:557 Quantities: Error During Test at /home/pkgeval/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:20 Got exception outside of a @test type RootHydraulics has no field SH Stacktrace: [1] getproperty @ ./Base.jl:37 [inlined] [2] unpack @ ~/.julia/packages/UnPack/EkESO/src/UnPack.jl:34 [inlined] [3] macro expansion @ ~/.julia/packages/UnPack/EkESO/src/UnPack.jl:101 [inlined] [4] xylem_pressure_profile!(hs::ClimaCache.RootHydraulics{Float32}, mode::ClimaCache.SteadyStateFlow{Float32}, T::Float32; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:320 [5] xylem_pressure_profile!(organ::ClimaCache.Root{Float32}; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:219 [6] xylem_pressure_profile!(spac::ClimaCache.MonoMLGrassSPAC{Float32}; update::Bool) @ PlantHydraulics ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:534 [7] xylem_pressure_profile! @ ~/.julia/packages/PlantHydraulics/Zv9OM/src/pressure_profile.jl:523 [inlined] [8] soil_plant_air_continuum!(spac::ClimaCache.MonoMLGrassSPAC{Float32}, δt::Float32; update::Bool, θ_on::Bool) @ SoilPlantAirContinuum ~/.julia/packages/SoilPlantAirContinuum/lZiSo/src/model.jl:48 [9] soil_plant_air_continuum!(spac::ClimaCache.MonoMLGrassSPAC{Float32}, δt::Float32) @ SoilPlantAirContinuum ~/.julia/packages/SoilPlantAirContinuum/lZiSo/src/model.jl:43 [10] macro expansion @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:24 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [12] macro expansion @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:21 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [14] top-level scope @ ~/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:7 [15] include(fname::String) @ Base.MainInclude ./client.jl:494 [16] top-level scope @ none:6 [17] eval @ ./boot.jl:385 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [19] _start() @ Base ./client.jl:557 Test Summary: | Pass Error Total Time SoilPlantAirContinuum Test | 1 2 3 3m45.2s Core Function | 1 1 2 3m44.5s Quantities | 1 1 0.6s ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SoilPlantAirContinuum/lZiSo/test/runtests.jl:3 Testing failed after 244.12s ERROR: LoadError: Package SoilPlantAirContinuum errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 312.45s: package tests unexpectedly errored