Package evaluation of RheaReactions on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T08:36:03.660 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.33s ################################################################################ # Installation # Installing RheaReactions... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [e7041bdd] + RheaReactions v0.6.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [d1d4a3ce] + BitFlags v0.1.9 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [460bff9d] + ExceptionUnwrapping v0.1.11 [cd3eb016] + HTTP v1.10.15 [eafb193a] + Highlights v0.5.3 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 [1c23619d] + MyterialColors v0.3.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [e7041bdd] + RheaReactions v0.6.1 [6c6a2e73] + Scratch v1.2.1 [777ac1f9] + SimpleBufferStream v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [22787eb5] + Term v2.0.7 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [76f85450] + LibGit2 [8f399da3] + Libdl [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [83775a58] + Zlib_jll v1.2.13+1 Installation completed after 7.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 71.49s ################################################################################ # Testing # Testing RheaReactions Status `/tmp/jl_1EI6FZ/Project.toml` [ffbed154] DocStringExtensions v0.9.3 [cd3eb016] HTTP v1.10.15 [682c06a0] JSON v0.21.4 [e7041bdd] RheaReactions v0.6.1 [6c6a2e73] Scratch v1.2.1 [22787eb5] Term v2.0.7 [9e88b42a] Serialization [8dfed614] Test Status `/tmp/jl_1EI6FZ/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [d1d4a3ce] BitFlags v0.1.9 [da1fd8a2] CodeTracking v1.3.6 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.3 [460bff9d] ExceptionUnwrapping v0.1.11 [cd3eb016] HTTP v1.10.15 [eafb193a] Highlights v0.5.3 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [e6f89c97] LoggingExtras v1.1.0 [739be429] MbedTLS v1.1.9 [1c23619d] MyterialColors v0.3.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [33c8b6b6] ProgressLogging v0.1.4 [e7041bdd] RheaReactions v0.6.1 [6c6a2e73] Scratch v1.2.1 [777ac1f9] SimpleBufferStream v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [22787eb5] Term v2.0.7 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [458c3c95] OpenSSL_jll v3.0.16+0 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [76f85450] LibGit2 [8f399da3] Libdl [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [83775a58] Zlib_jll v1.2.13+1 Testing Running tests...  Cache cleared! PPS reaction: Test Failed at /home/pkgeval/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:12 Expression: rxn.equation == "ATP + H2O + pyruvate = AMP + 2 H(+) + phosphate + phosphoenolpyruvate" Evaluated: "pyruvate + ATP + H2O = phosphoenolpyruvate + AMP + phosphate + 2 H(+)" == "ATP + H2O + pyruvate = AMP + 2 H(+) + phosphate + phosphoenolpyruvate" Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:12 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:8 CMP kinase reaction: Test Failed at /home/pkgeval/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:32 Expression: rxn.equation == "ATP + CMP = ADP + CDP" Evaluated: "CMP + ATP = CDP + ADP" == "ATP + CMP = ADP + CDP" Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:32 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] top-level scope @ ~/.julia/packages/RheaReactions/sjL3N/test/reactions.jl:28 Test Summary: | Pass Fail Total Time RheaReactions.jl | 28 2 30 46.1s PPS reaction | 7 1 8 26.7s CMP kinase reaction | 7 1 8 0.8s PPS metabolites | 5 5 3.0s Reaction matches | 3 3 3.3s Reaction EC matches | 1 1 0.7s Reaction Uniprot matches | 1 1 1.0s Reaction quartet | 4 4 6.8s ERROR: LoadError: Some tests did not pass: 28 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RheaReactions/sjL3N/test/runtests.jl:4 Testing failed after 44.34s ERROR: LoadError: Package RheaReactions errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 158.34s: package has test failures