Package evaluation of PiecewiseDeterministicMarkovProcesses on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T12:32:21.720 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.07s ################################################################################ # Installation # Installing PiecewiseDeterministicMarkovProcesses... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.9 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.164.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.1 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.14.2 [7f56f5a3] + LSODA v0.7.5 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.2 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.9 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.25 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.30.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.0 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [efcf1570] + Setfield v1.1.1 [699a6c99] + SimpleTraits v0.9.4 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.7 [c3572dad] + Sundials v4.26.1 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [aae0fff6] + LSODA_jll v0.1.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] + Sundials_jll v5.2.2+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.97s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 44.28s ################################################################################ # Testing # Testing PiecewiseDeterministicMarkovProcesses Status `/tmp/jl_qN6asp/Project.toml` [f6369f11] ForwardDiff v0.10.38 [ccbc3e58] JumpProcesses v9.14.2 [7f56f5a3] LSODA v0.7.5 [1dea7af3] OrdinaryDiffEq v6.91.0 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.9 [d236fae5] PreallocationTools v0.4.25 [731186ca] RecursiveArrayTools v3.30.0 [0bca4576] SciMLBase v2.75.0 [c3572dad] Sundials v4.26.1 [37e2e46d] LinearAlgebra [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_qN6asp/Manifest.toml` [47edcb42] ADTypes v1.13.0 [7d9f7c33] Accessors v0.1.41 [79e6a3ab] Adapt v4.2.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.1.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.164.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.42 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.4 [86223c79] Graphs v1.12.0 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.14.2 [ba0b0d4f] Krylov v0.9.10 [7f56f5a3] LSODA v0.7.5 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.1.2 [8913a72c] NonlinearSolve v4.4.0 [be0214bd] NonlinearSolveBase v1.5.0 [5959db7a] NonlinearSolveFirstOrder v1.3.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.2.0 [26075421] NonlinearSolveSpectralMethods v1.1.0 [bac558e1] OrderedCollections v1.8.0 [1dea7af3] OrdinaryDiffEq v6.91.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.2.0 [bbf590c4] OrdinaryDiffEqCore v1.18.1 [50262376] OrdinaryDiffEqDefault v1.3.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.3.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.4.0 [5960d6e9] OrdinaryDiffEqFIRK v1.7.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.2.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.2.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.6.0 [2d112036] OrdinaryDiffEqSDIRK v1.2.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.2.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.9 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v0.4.25 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.30.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.75.0 [19f34311] SciMLJacobianOperators v0.1.1 [c0aeaf25] SciMLOperators v0.3.12 [53ae85a6] SciMLStructures v1.6.1 [efcf1570] Setfield v1.1.1 [727e6d20] SimpleNonlinearSolve v2.1.0 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [47a9eef4] SparseDiffTools v2.23.1 [0a514795] SparseMatrixColorings v0.4.13 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [7792a7ef] StrideArraysCore v0.5.7 [c3572dad] Sundials v4.26.1 [2efcf032] SymbolicIndexingInterface v0.3.38 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.27 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [19fa3120] VertexSafeGraphs v0.2.0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aae0fff6] LSODA_jll v0.1.2+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] Sundials_jll v5.2.2+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... 0.068800 seconds (10.10 k allocations: 615.969 KiB, 99.92% compilation time) Comparison of solvers ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:152 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yTEch/src/misc_utils.jl:152 6.294635 seconds (2.72 M allocations: 187.311 MiB, 2.30% gc time, 99.89% compilation time) --> norm difference = 0.00020895427984513049 - solver = cvode 3.468891 seconds (1.02 M allocations: 68.511 MiB, 1.58% gc time, 99.98% compilation time) --> norm difference = 4.562246893158317e-6 - solver = lsoda 2.665634 seconds (1.37 M allocations: 95.090 MiB, 2.34% gc time, 99.88% compilation time) --> norm difference = 0.00020895427882905437 - solver = CVODEBDF 2.273957 seconds (1.16 M allocations: 80.175 MiB, 2.08% gc time, 99.86% compilation time) --> norm difference = 9.164040960740749e-6 - solver = CVODEAdams 38.660013 seconds (2.25 M allocations: 135.946 MiB, 0.19% gc time, 99.99% compilation time) --> norm difference = 0.00021445406171594072 - solver = RS23 4.375309 seconds (2.28 M allocations: 155.646 MiB, 2.13% gc time, 99.94% compilation time) --> norm difference = 1.413279093753772e-8 - solver = tsit5 9.194195 seconds (2.88 M allocations: 193.464 MiB, 1.89% gc time, 99.96% compilation time) --> norm difference = 1.5885276383187374e-7 - solver = rodas4P-AutoDiff 8.140490 seconds (2.29 M allocations: 154.088 MiB, 1.17% gc time, 99.96% compilation time) --> norm difference = 3.1827500635017714e-8 - solver = rodas5 6.344769 seconds (3.05 M allocations: 207.424 MiB, 1.73% gc time, 99.96% compilation time) --> norm difference = 1.413279093753772e-8 - solver = AutoTsit5RS23 0.026496 seconds (2.43 k allocations: 172.289 KiB, 93.04% compilation time) Test Summary: | Pass Total Time Example TCP | 1 1 1m27.6s WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:5. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:74 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:75 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:152 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yTEch/src/misc_utils.jl:152 --> norm difference = 9.985930109479568e-7 - solver = lsoda --> norm difference = 1.2362318864367339e-5 - solver = cvode --> norm difference = 1.2362287630685032e-5 - solver = CVODEBDF --> norm difference = 1.534517703571936e-6 - solver = CVODEAdams --> norm difference = 3.4168914364585135e-9 - solver = tsit5 --> norm difference = 1.6708951999788724e-8 - solver = rodas4P-AutoDiff --> norm difference = 0.0065577534809497795 - solver = rodas5 --> norm difference = 2.2784790345120598e-5 - solver = RS23 --> norm difference = 4.12005027650153e-7 - solver = AutoTsit5-RS23 Test Summary: | Pass Total Time Example explosion of jump times | 1 1 30.9s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:29 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:71. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:33 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:79. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:81. ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice(ad_alg::Bool, chunksize::Val{0}, diff_type::Val{:forward}) at misc_utils.jl:152 └ @ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/yTEch/src/misc_utils.jl:152 Comparison of solvers - CHV ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:121 --> norm difference = 0.0023436667727310123 - solver = cvode ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 --> norm difference = 0.0021281768231347087 - solver = lsoda --> norm difference = 0.0023436725223291432 - solver = CVODEBDF --> norm difference = 0.002069344401206763 - solver = CVODEAdams --> norm difference = 0.0003403468526812503 - solver = tsit5 --> norm difference = 5.704655495719635e-5 - solver = rodas4P-noAutoDiff --> norm difference = 1.0002506769524189e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.0003403468526812503 - solver = AutoTsit5-RS23 Comparison of solvers - CHV (without saving solution) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 Comparison of solvers - CHV (limited by simulation time) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ PiecewiseDeterministicMarkovProcesses ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: `Base.getindex(A::AbstractDiffEqArray, i::Int)` is deprecated, use `Base.getindex(A, :, i)` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ PiecewiseDeterministicMarkovProcesses ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 0.047062 seconds (4.30 k allocations: 249.297 KiB) 0.047648 seconds (4.26 k allocations: 246.047 KiB) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 ┌ Warning: `Base.getindex(A::AbstractVectorOfArray, I::Int)` is deprecated, use `Base.getindex(A, :, I)` instead. │ caller = macro expansion at Test.jl:669 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:669 Comparison of solvers - rejection ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:176 --> norm difference = 0.001893487349736045 - solver = cvode --> norm difference = 0.001893487349736045 - solver = lsoda --> norm difference = 0.001893487349736045 - solver = CVODEBDF --> norm difference = 0.001893487349736045 - solver = CVODEAdams --> norm difference = 0.001893487349736045 - solver = tsit5 --> norm difference = 0.001893487349736045 - solver = rodas4P-noAutoDiff --> norm difference = 0.001893487349736045 - solver = rodas4P-AutoDiff --> norm difference = 0.001893487349736045 - solver = AutoTsit5-RS23 Alternate between calls CHV - Rej --> norm diff (CHV) = 0.00014644591919932282 --> norm diff (Rej) = 0.001893487349736045 Comparison of solvers, with function Delta ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:212 --> norm difference = 0.005069408256076713 - solver = cvode --> norm difference = 0.0072302110738746705 - solver = lsoda --> norm difference = 0.005070017916750658 - solver = CVODEBDF --> norm difference = 0.010638187483436923 - solver = CVODEAdams --> norm difference = 0.0124972433432049 - solver = tsit5 --> norm difference = 7.266276497830404e-5 - solver = rodas4P-noAutoDiff --> norm difference = 8.647983008813753e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.0124972433432049 - solver = AutoTsit5-RS23 --> allocations = (550576, 1099920, 1636592) Test Summary: | Pass Total Time Example with stiff ODE part | 74 74 1m34.8s Test Summary: |Time Controlling allocations | None 0.0s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:71 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:79 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:81 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:15. Test Summary: | Pass Total Time Test Rate structures 1/2 | 10 10 6.6s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:15. --> Allocations with Composite struct 0.000367 seconds (176 allocations: 10.141 KiB) 0.000496 seconds (195 allocations: 10.375 KiB) 0.000630 seconds (215 allocations: 10.688 KiB) --> Allocations with Composite struct made of VariableRates 0.013542 seconds (1.53 k allocations: 111.453 KiB, 96.13% compilation time) 0.000503 seconds (195 allocations: 10.172 KiB) 0.000602 seconds (215 allocations: 10.484 KiB) Test Summary: | Pass Total Time Test Rate structures 2/2 | 9 9 9.8s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:25 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:4. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:37 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:17. 0.427132 seconds (150.00 k allocations: 9.088 MiB, 99.25% compilation time: 100% of which was recompilation) 0.508528 seconds (335.29 k allocations: 17.556 MiB, 84.75% compilation time: 12% of which was recompilation) 0.022488 seconds (153.56 k allocations: 8.981 MiB) 6.915791 seconds (1.70 M allocations: 115.506 MiB, 0.73% gc time, 99.74% compilation time) Test Summary: |Time Example with 2d example, for autodiff | None 8.1s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:4 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:5. WARNING: Method definition rate_tcp(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:17 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:17. WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:27. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:90 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:91 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:152 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yTEch/src/misc_utils.jl:152 --> norm difference = 0.0 - solver = cvode --> norm difference = 0.0 - solver = lsoda --> norm difference = 0.0 - solver = CVODEBDF --> norm difference = 0.0 - solver = CVODEAdams --> norm difference = 0.0 - solver = tsit5 --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = RS23 --> norm difference = 0.0 - solver = AutoTsit5RS23 test for allocations, should not depend on 0.001091 seconds (210 allocations: 9.875 KiB) 0.001878 seconds (289 allocations: 11.109 KiB) 0.002691 seconds (362 allocations: 12.250 KiB) test for multiple calls, the result should not depend on Test Summary: | Pass Total Time Rejection method | 1 1 21.6s Test Summary: | Pass Total Time Test number of fictitious jumps | 2 2 0.0s WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmp_example_eva.jl:11. --> Case simple chv: 4.369001 seconds (2.69 M allocations: 184.823 MiB, 2.97% gc time, 99.86% compilation time) --> For simulations rejection (Tsit5): 0.451752 seconds (142.87 k allocations: 8.203 MiB, 98.49% compilation time) --> Simulation using save_at to see sampling behaviour 0.014782 seconds (2.11 k allocations: 169.750 KiB, 93.79% compilation time) Test Summary: | Pass Total Time Neuron model | 2 2 5.3s ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ PiecewiseDeterministicMarkovProcesses ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: `Base.getindex(A::AbstractDiffEqArray, i::Int)` is deprecated, use `Base.getindex(A, :, i)` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ PiecewiseDeterministicMarkovProcesses ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 Test Summary: | Pass Total Time Example SIR | 3 3 8.6s --> rejection algorithm for SSA Test Summary: | Pass Total Time Example SIR(rejection) | 3 3 4.4s Test Summary: | Pass Total Time Neural network | 2 2 2.8s Test Summary: |Time JumpProcesses Wrap | None 0.0s Testing PiecewiseDeterministicMarkovProcesses tests passed Testing completed after 703.23s PkgEval succeeded after 776.91s