Package evaluation of OpenADMIXTURE on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T12:40:42.881 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 3.97s ################################################################################ # Installation # Installing OpenADMIXTURE... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [425c031d] + OpenADMIXTURE v0.1.0 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 ⌅ [67c07d97] + Automa v0.8.4 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [48062228] + FilePathsBase v0.9.23 [59287772] + Formatting v0.4.3 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.2 [6fe1bfb0] + OffsetArrays v1.15.0 [425c031d] + OpenADMIXTURE v0.1.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [a6138be3] + SparseKmeansFeatureRanking v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [bc48ee85] + Tullio v0.3.8 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.38s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 150.66s ################################################################################ # Testing # Testing OpenADMIXTURE Status `/tmp/jl_K8eokd/Project.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [59287772] Formatting v0.4.3 [bdcacae8] LoopVectorization v0.12.171 [425c031d] OpenADMIXTURE v0.1.0 [f517fe37] Polyester v0.7.16 [92933f4c] ProgressMeter v1.10.2 [ae029012] Requires v1.3.0 [4e780e97] SnpArrays v0.3.22 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [fd094767] Suppressor v0.2.8 [37e2e46d] LinearAlgebra [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_K8eokd/Manifest.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 ⌃ [4fba245c] ArrayInterface v7.7.1 ⌅ [67c07d97] Automa v0.8.4 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.3 [48062228] FilePathsBase v0.9.23 [59287772] Formatting v0.4.3 [c27321d9] Glob v1.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.171 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.15.0 [425c031d] OpenADMIXTURE v0.1.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [91c51154] SentinelArrays v1.4.8 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.1 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [bc48ee85] Tullio v0.3.8 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [9fa8497b] Future [b77e0a4c] InteractiveUtils [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [de0858da] Printf [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Using /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/../data/EUR_subset.bed as input. Loading genotype data... Loaded 379 samples and 54051 SNPs Performing 5 EM steps for priming EM Iteration 1 (0.213054769 sec): Loglikelihood = -1.6585565266198235e7 EM Iteration 2 (0.209683902 sec): Loglikelihood = -1.6007521238366533e7 EM Iteration 3 (0.207900379 sec): Loglikelihood = -1.5916445495428987e7 EM Iteration 4 (0.211619293 sec): Loglikelihood = -1.587417626747727e7 EM Iteration 5 (0.210059298 sec): Loglikelihood = -1.5844784297993343e7 Running main algorithm 0%|▁ | ETA: 0:36:36 ( 2.20 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 2 Execution time: 1.92318532 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5605199791986194e7 Other LogLikelihoods: Previous = -1.5661966737375751e7 QN = -1.5605199791986194e7, Basic = -1.5609040036582384e7 LogLikelihood ↗: 0.0036245093825980914 Past LogLikelihoods: ["-1.5845e+07", "-1.5662e+07"]                     Running main algorithm 0%|▁ | ETA: 0:39:25 ( 2.37 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 3 Execution time: 1.83161392 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5586228372093504e7 Other LogLikelihoods: Previous = -1.5605199791986194e7 QN = -1.5586228372093504e7, Basic = -1.558989311248903e7 LogLikelihood ↗: 0.0012157114388520478 Past LogLikelihoods: ["-1.5845e+07", "-1.5662e+07", "-1.5605e+07"]                     Running main algorithm 0%|▂ | ETA: 0:38:43 ( 2.33 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 4 Execution time: 1.897209546 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.557902813062439e7 Other LogLikelihoods: Previous = -1.5586228372093504e7 QN = -1.557902813062439e7, Basic = -1.557593892598145e7 LogLikelihood ↗: 0.00046196175862575915 Past LogLikelihoods: ["-1.5845e+07", "-1.5662e+07", "-1.5605e+07", "-1.5586e+07"]                       Running main algorithm 0%|▂ | ETA: 0:36:59 ( 2.23 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 5 Execution time: 1.822095063 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5567066087137524e7 Other LogLikelihoods: Previous = -1.557902813062439e7 QN = -1.5567066087137524e7, Basic = -1.5566929427850641e7 LogLikelihood ↗: 0.0007678298919912029 Past LogLikelihoods: ["-1.5845e+07", "-1.5662e+07", "-1.5605e+07", "-1.5586e+07", "-1.5579e+07"]                       Running main algorithm 1%|▂ | ETA: 0:35:47 ( 2.16 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 6 Execution time: 1.805820533 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5561476004841125e7 Other LogLikelihoods: Previous = -1.5567066087137524e7 QN = -1.5561476004841125e7, Basic = -1.556264024120358e7 LogLikelihood ↗: 0.000359096715149059 Past LogLikelihoods: ["-1.5845e+07", "-1.5662e+07", "-1.5605e+07", "-1.5586e+07", "-1.5579e+07", "-1.5567e+07"]                       Running main algorithm 1%|▃ | ETA: 0:35:43 ( 2.16 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 7 Execution time: 2.149121222 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5558616674667932e7 Other LogLikelihoods: Previous = -1.5561476004841125e7 QN = -1.5558616674667932e7, Basic = -1.5558483191215409e7 LogLikelihood ↗: 0.00018374414948190118 Past LogLikelihoods: ["-1.5662e+07", "-1.5605e+07", "-1.5586e+07", "-1.5579e+07", "-1.5567e+07", "-1.5561e+07"]                       Running main algorithm 1%|▃ | ETA: 0:34:57 ( 2.11 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 8 Execution time: 1.804470626 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5556607054798864e7 Other LogLikelihoods: Previous = -1.5558616674667932e7 QN = -1.5556607054798864e7, Basic = -1.555656394773972e7 LogLikelihood ↗: 0.00012916443094457538 Past LogLikelihoods: ["-1.5605e+07", "-1.5586e+07", "-1.5579e+07", "-1.5567e+07", "-1.5561e+07", "-1.5559e+07"]                       Running main algorithm 1%|▄ | ETA: 0:34:47 ( 2.11 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 9 Execution time: 2.042737866 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5555028877712639e7 Other LogLikelihoods: Previous = -1.5556607054798864e7 QN = -1.5555028877712639e7, Basic = -1.5555272556777712e7 LogLikelihood ↗: 0.00010144738378141057 Past LogLikelihoods: ["-1.5586e+07", "-1.5579e+07", "-1.5567e+07", "-1.5561e+07", "-1.5559e+07", "-1.5557e+07"]                       Running main algorithm 1%|▄ | ETA: 0:34:21 ( 2.08 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 10 Execution time: 1.862681415 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5554389948288705e7 Other LogLikelihoods: Previous = -1.5555028877712639e7 QN = -1.5572307162296195e7, Basic = -1.5554389948288705e7 LogLikelihood ↗: 4.107542512179528e-5 Past LogLikelihoods: ["-1.5579e+07", "-1.5567e+07", "-1.5561e+07", "-1.5559e+07", "-1.5557e+07", "-1.5555e+07"]                       Running main algorithm 1%|▄ | ETA: 0:34:08 ( 2.07 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 11 Execution time: 1.960362326 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5553867013950767e7 Other LogLikelihoods: Previous = -1.5554389948288705e7 QN = -1.5562818039977925e7, Basic = -1.5553867013950767e7 LogLikelihood ↗: 3.361972662873465e-5 Past LogLikelihoods: ["-1.5567e+07", "-1.5561e+07", "-1.5559e+07", "-1.5557e+07", "-1.5555e+07", "-1.5554e+07"]                       Running main algorithm 1%|▅ | ETA: 0:34:37 ( 2.10 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 12 Execution time: 2.445107847 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5553428107705034e7 Other LogLikelihoods: Previous = -1.5553867013950767e7 QN = -1.5559131012878079e7, Basic = -1.5553428107705034e7 LogLikelihood ↗: 2.8218464600411636e-5 Past LogLikelihoods: ["-1.5561e+07", "-1.5559e+07", "-1.5557e+07", "-1.5555e+07", "-1.5554e+07", "-1.5554e+07"]                       Running main algorithm 1%|▅ | ETA: 0:34:14 ( 2.08 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 13 Execution time: 1.829465151 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5553067050573548e7 Other LogLikelihoods: Previous = -1.5553428107705034e7 QN = -1.5554525394768834e7, Basic = -1.5553067050573548e7 LogLikelihood ↗: 2.3213990445434272e-5 Past LogLikelihoods: ["-1.5559e+07", "-1.5557e+07", "-1.5555e+07", "-1.5554e+07", "-1.5554e+07", "-1.5553e+07"]                       Running main algorithm 1%|▆ | ETA: 0:34:04 ( 2.07 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 14 Execution time: 1.965696723 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.555278497410975e7 Other LogLikelihoods: Previous = -1.5553067050573548e7 QN = -1.5553105606121972e7, Basic = -1.555278497410975e7 LogLikelihood ↗: 1.8136388332978923e-5 Past LogLikelihoods: ["-1.5557e+07", "-1.5555e+07", "-1.5554e+07", "-1.5554e+07", "-1.5553e+07", "-1.5553e+07"]                       Running main algorithm 2%|▆ | ETA: 0:33:48 ( 2.06 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 15 Execution time: 1.860786853 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552639211087858e7 Other LogLikelihoods: Previous = -1.555278497410975e7 QN = -1.5552639211087858e7, Basic = -1.5552595414835572e7 LogLikelihood ↗: 9.372149241089872e-6 Past LogLikelihoods: ["-1.5555e+07", "-1.5554e+07", "-1.5554e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07"]                       Running main algorithm 2%|▆ | ETA: 0:33:43 ( 2.06 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 16 Execution time: 2.014628732 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552328125458859e7 Other LogLikelihoods: Previous = -1.5552639211087858e7 QN = -1.5552328125458859e7, Basic = -1.5552311626407882e7 LogLikelihood ↗: 2.000211184591851e-5 Past LogLikelihoods: ["-1.5554e+07", "-1.5554e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07"]                       Running main algorithm 2%|▇ | ETA: 0:33:44 ( 2.06 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 17 Execution time: 2.096620828 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552259885576095e7 Other LogLikelihoods: Previous = -1.5552328125458859e7 QN = -1.5552259885576095e7, Basic = -1.5552266154130427e7 LogLikelihood ↗: 4.387759968346335e-6 Past LogLikelihoods: ["-1.5554e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07"]                       Running main algorithm 2%|▇ | ETA: 0:33:41 ( 2.06 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 18 Execution time: 2.052529501 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552230063723285e7 Other LogLikelihoods: Previous = -1.5552259885576095e7 QN = -1.5552230063723285e7, Basic = -1.5552235725528445e7 LogLikelihood ↗: 1.917525364808176e-6 Past LogLikelihoods: ["-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█ | ETA: 0:33:47 ( 2.07 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 19 Execution time: 2.218207284 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552216346354242e7 Other LogLikelihoods: Previous = -1.5552230063723285e7 QN = -1.5552216346354242e7, Basic = -1.555222164931152e7 LogLikelihood ↗: 8.820194265473032e-7 Past LogLikelihoods: ["-1.5553e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█ | ETA: 0:33:32 ( 2.05 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 20 Execution time: 1.789581592 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552207512250777e7 Other LogLikelihoods: Previous = -1.5552216346354242e7 QN = -1.5552207512250777e7, Basic = -1.5552210406862404e7 LogLikelihood ↗: 5.680285863018589e-7 Past LogLikelihoods: ["-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█ | ETA: 0:33:30 ( 2.05 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 21 Execution time: 2.063379984 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552200611477997e7 Other LogLikelihoods: Previous = -1.5552207512250777e7 QN = -1.5552200611477997e7, Basic = -1.5552204951377708e7 LogLikelihood ↗: 4.437166090244169e-7 Past LogLikelihoods: ["-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█▁ | ETA: 0:33:22 ( 2.05 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 22 Execution time: 1.909705802 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552197336867832e7 Other LogLikelihoods: Previous = -1.5552200611477997e7 QN = -1.5552197336867832e7, Basic = -1.5552198775938418e7 LogLikelihood ↗: 2.1055606517124269e-7 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█▁ | ETA: 0:33:10 ( 2.04 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 23 Execution time: 1.815770474 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552194868097581e7 Other LogLikelihoods: Previous = -1.5552197336867832e7 QN = -1.5552194868097581e7, Basic = -1.5552196340740334e7 LogLikelihood ↗: 1.587409288349003e-7 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█▂ | ETA: 0:33:11 ( 2.04 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 24 Execution time: 2.099464609 Initial LogLikelihood: -1.5844784297993343e7 Current LogLikelihood: -1.5552193929721253e7 Other LogLikelihoods: Previous = -1.5552194868097581e7 QN = -1.5552193929721253e7, Basic = -1.5552194288014418e7 LogLikelihood ↗: 6.033722802055984e-8 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 100%|██████████████████████████████████████████████████| Time: 0:00:48 (48.95 ms/it) initial ll: -1.5844784297993343e7 Iteration 1 (1.825880636 sec): LogLikelihood = -1.5661966737375751e7, reldiff = 0.011538027730724302 LogLikelihoods: Previous = -1.5844784297993343e7 QN = -1.5661966737375751e7, Basic = -1.5658797780233778e7 Iteration 2 (1.92318532 sec): LogLikelihood = -1.5605199791986194e7, reldiff = 0.0036245093825980914 LogLikelihoods: Previous = -1.5661966737375751e7 QN = -1.5605199791986194e7, Basic = -1.5609040036582384e7 Iteration 3 (1.83161392 sec): LogLikelihood = -1.5586228372093504e7, reldiff = 0.0012157114388520478 LogLikelihoods: Previous = -1.5605199791986194e7 QN = -1.5586228372093504e7, Basic = -1.558989311248903e7 Iteration 4 (1.897209546 sec): LogLikelihood = -1.557902813062439e7, reldiff = 0.00046196175862575915 LogLikelihoods: Previous = -1.5586228372093504e7 QN = -1.557902813062439e7, Basic = -1.557593892598145e7 Iteration 5 (1.822095063 sec): LogLikelihood = -1.5567066087137524e7, reldiff = 0.0007678298919912029 LogLikelihoods: Previous = -1.557902813062439e7 QN = -1.5567066087137524e7, Basic = -1.5566929427850641e7 Iteration 6 (1.805820533 sec): LogLikelihood = -1.5561476004841125e7, reldiff = 0.000359096715149059 LogLikelihoods: Previous = -1.5567066087137524e7 QN = -1.5561476004841125e7, Basic = -1.556264024120358e7 Iteration 7 (2.149121222 sec): LogLikelihood = -1.5558616674667932e7, reldiff = 0.00018374414948190118 LogLikelihoods: Previous = -1.5561476004841125e7 QN = -1.5558616674667932e7, Basic = -1.5558483191215409e7 Iteration 8 (1.804470626 sec): LogLikelihood = -1.5556607054798864e7, reldiff = 0.00012916443094457538 LogLikelihoods: Previous = -1.5558616674667932e7 QN = -1.5556607054798864e7, Basic = -1.555656394773972e7 Iteration 9 (2.042737866 sec): LogLikelihood = -1.5555028877712639e7, reldiff = 0.00010144738378141057 LogLikelihoods: Previous = -1.5556607054798864e7 QN = -1.5555028877712639e7, Basic = -1.5555272556777712e7 Iteration 10 (1.862681415 sec): LogLikelihood = -1.5554389948288705e7, reldiff = 4.107542512179528e-5 LogLikelihoods: Previous = -1.5555028877712639e7 QN = -1.5572307162296195e7, Basic = -1.5554389948288705e7 Iteration 11 (1.960362326 sec): LogLikelihood = -1.5553867013950767e7, reldiff = 3.361972662873465e-5 LogLikelihoods: Previous = -1.5554389948288705e7 QN = -1.5562818039977925e7, Basic = -1.5553867013950767e7 Iteration 12 (2.445107847 sec): LogLikelihood = -1.5553428107705034e7, reldiff = 2.8218464600411636e-5 LogLikelihoods: Previous = -1.5553867013950767e7 QN = -1.5559131012878079e7, Basic = -1.5553428107705034e7 Iteration 13 (1.829465151 sec): LogLikelihood = -1.5553067050573548e7, reldiff = 2.3213990445434272e-5 LogLikelihoods: Previous = -1.5553428107705034e7 QN = -1.5554525394768834e7, Basic = -1.5553067050573548e7 Iteration 14 (1.965696723 sec): LogLikelihood = -1.555278497410975e7, reldiff = 1.8136388332978923e-5 LogLikelihoods: Previous = -1.5553067050573548e7 QN = -1.5553105606121972e7, Basic = -1.555278497410975e7 Iteration 15 (1.860786853 sec): LogLikelihood = -1.5552639211087858e7, reldiff = 9.372149241089872e-6 LogLikelihoods: Previous = -1.555278497410975e7 QN = -1.5552639211087858e7, Basic = -1.5552595414835572e7 Iteration 16 (2.014628732 sec): LogLikelihood = -1.5552328125458859e7, reldiff = 2.000211184591851e-5 LogLikelihoods: Previous = -1.5552639211087858e7 QN = -1.5552328125458859e7, Basic = -1.5552311626407882e7 Iteration 17 (2.096620828 sec): LogLikelihood = -1.5552259885576095e7, reldiff = 4.387759968346335e-6 LogLikelihoods: Previous = -1.5552328125458859e7 QN = -1.5552259885576095e7, Basic = -1.5552266154130427e7 Iteration 18 (2.052529501 sec): LogLikelihood = -1.5552230063723285e7, reldiff = 1.917525364808176e-6 LogLikelihoods: Previous = -1.5552259885576095e7 QN = -1.5552230063723285e7, Basic = -1.5552235725528445e7 Iteration 19 (2.218207284 sec): LogLikelihood = -1.5552216346354242e7, reldiff = 8.820194265473032e-7 LogLikelihoods: Previous = -1.5552230063723285e7 QN = -1.5552216346354242e7, Basic = -1.555222164931152e7 Iteration 20 (1.789581592 sec): LogLikelihood = -1.5552207512250777e7, reldiff = 5.680285863018589e-7 LogLikelihoods: Previous = -1.5552216346354242e7 QN = -1.5552207512250777e7, Basic = -1.5552210406862404e7 Iteration 21 (2.063379984 sec): LogLikelihood = -1.5552200611477997e7, reldiff = 4.437166090244169e-7 LogLikelihoods: Previous = -1.5552207512250777e7 QN = -1.5552200611477997e7, Basic = -1.5552204951377708e7 Iteration 22 (1.909705802 sec): LogLikelihood = -1.5552197336867832e7, reldiff = 2.1055606517124269e-7 LogLikelihoods: Previous = -1.5552200611477997e7 QN = -1.5552197336867832e7, Basic = -1.5552198775938418e7 Iteration 23 (1.815770474 sec): LogLikelihood = -1.5552194868097581e7, reldiff = 1.587409288349003e-7 LogLikelihoods: Previous = -1.5552197336867832e7 QN = -1.5552194868097581e7, Basic = -1.5552196340740334e7 Iteration 24 (2.099464609 sec): LogLikelihood = -1.5552193929721253e7, reldiff = 6.033722802055984e-8 LogLikelihoods: Previous = -1.5552194868097581e7 QN = -1.5552193929721253e7, Basic = -1.5552194288014418e7 Main algorithm converged in 24 iterations over 48.860838889 sec. Using /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/../data/EUR_subset.bed as input. cnt of sparse1:3 test_4_1000aims Loading genotype data... Loaded 379 samples and 1000 SNPs Performing 5 EM steps for priming EM Iteration 1 (0.004747234 sec): Loglikelihood = -272294.5194943007 EM Iteration 2 (0.004683374 sec): Loglikelihood = -260803.9520262993 EM Iteration 3 (0.004391956 sec): Loglikelihood = -259193.3807892882 EM Iteration 4 (0.004611484 sec): Loglikelihood = -258411.9451666728 EM Iteration 5 (0.004556985 sec): Loglikelihood = -257861.60058063112 Running main algorithm 1%|▅ | ETA: 0:00:40 (40.79 ms/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 13 Execution time: 0.03560395 Initial LogLikelihood: -257861.60058063112 Current LogLikelihood: -216519.820656549 Other LogLikelihoods: Previous = -216519.90154602082 QN = -216519.820656549, Basic = -216519.86060480514 LogLikelihood ↗: 3.735890845553193e-7 Past LogLikelihoods: ["-2.1657e+05", "-2.1653e+05", "-2.1652e+05", "-2.1652e+05", "-2.1652e+05", "-2.1652e+05"]                       Running main algorithm 100%|██████████████████████████████████████████████████| Time: 0:00:00 ( 0.60 ms/it) initial ll: -257861.60058063112 Iteration 1 (0.051740082 sec): LogLikelihood = -225956.59657460928, reldiff = 0.12372917849800366 LogLikelihoods: Previous = -257861.60058063112 QN = -225956.59657460928, Basic = -225207.04679236357 Iteration 2 (0.051241777 sec): LogLikelihood = -219930.5080320516, reldiff = 0.026669230435889923 LogLikelihoods: Previous = -225956.59657460928 QN = -219930.5080320516, Basic = -220636.6427239218 Iteration 3 (0.051528594 sec): LogLikelihood = -218076.44759096624, reldiff = 0.008430210331779748 LogLikelihoods: Previous = -219930.5080320516 QN = -218076.44759096624, Basic = -218011.6850999198 Iteration 4 (0.051749902 sec): LogLikelihood = -216999.42885371164, reldiff = 0.0049387210272001025 LogLikelihoods: Previous = -218076.44759096624 QN = -216999.42885371164, Basic = -217061.19939475926 Iteration 5 (0.038308394 sec): LogLikelihood = -216743.41948594226, reldiff = 0.0011797697769147905 LogLikelihoods: Previous = -216999.42885371164 QN = -216743.41948594226, Basic = -216767.06561800066 Iteration 6 (0.034978156 sec): LogLikelihood = -216602.7396968137, reldiff = 0.0006490614084719288 LogLikelihoods: Previous = -216743.41948594226 QN = -216895.80976344875, Basic = -216602.7396968137 Iteration 7 (0.036271824 sec): LogLikelihood = -216571.83441298455, reldiff = 0.00014268186945556768 LogLikelihoods: Previous = -216602.7396968137 QN = -216571.83441298455, Basic = -216556.32744801778 Iteration 8 (0.035105155 sec): LogLikelihood = -216532.87877787452, reldiff = 0.0001798739675250087 LogLikelihoods: Previous = -216571.83441298455 QN = -216586.69922235288, Basic = -216532.87877787452 Iteration 9 (0.035311784 sec): LogLikelihood = -216523.61398868368, reldiff = 4.278698571382279e-5 LogLikelihoods: Previous = -216532.87877787452 QN = -216523.61398868368, Basic = -216525.1942414597 Iteration 10 (0.035756858 sec): LogLikelihood = -216521.4978924904, reldiff = 9.773050404435357e-6 LogLikelihoods: Previous = -216523.61398868368 QN = -216521.4978924904, Basic = -216521.31190813394 Iteration 11 (0.035140745 sec): LogLikelihood = -216520.1517535853, reldiff = 6.217114319941767e-6 LogLikelihoods: Previous = -216521.4978924904 QN = -216520.1517535853, Basic = -216520.2558613512 Iteration 12 (0.035791579 sec): LogLikelihood = -216519.90154602082, reldiff = 1.1555855768941925e-6 LogLikelihoods: Previous = -216520.1517535853 QN = -216519.90154602082, Basic = -216519.96690791115 Iteration 13 (0.03560395 sec): LogLikelihood = -216519.820656549, reldiff = 3.735890845553193e-7 LogLikelihoods: Previous = -216519.90154602082 QN = -216519.820656549, Basic = -216519.86060480514 Iteration 14 (0.036348243 sec): LogLikelihood = -216519.79448024151, reldiff = 1.2089566403917358e-7 LogLikelihoods: Previous = -216519.820656549 QN = -216519.79448024151, Basic = -216519.8015775936 Iteration 15 (0.035972587 sec): LogLikelihood = -216519.78193892565, reldiff = 5.7922260168734956e-8 LogLikelihoods: Previous = -216519.79448024151 QN = -216519.78193892565, Basic = -216519.78915491214 Main algorithm converged in 15 iterations over 0.603309407 sec. Test Summary: | Pass Total Time OpenADMIXTURE.jl | 2 2 2m59.5s Testing OpenADMIXTURE tests passed Testing completed after 188.38s PkgEval succeeded after 353.72s