Package evaluation of Octofitter on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T17:57:41.266 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.88s ################################################################################ # Installation # Installing Octofitter... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [daf3887e] + Octofitter v5.2.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.6.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [0bf59076] + AdvancedHMC v0.6.4 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [4fba245c] + ArrayInterface v7.18.0 [c61b5328] + AstroTime v0.7.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.3 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 ⌅ [76274a88] + Bijectors v0.14.2 [d1d4a3ce] + BitFlags v0.1.9 [8ce10254] + Bumper v0.7.1 [fa961155] + CEnum v0.5.0 [3b1b4be9] + CFITSIO v1.4.2 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.2 [d360d2e6] + ChainRulesCore v1.25.1 [9e997f8a] + ChangesOfVariables v0.1.9 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.0 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.5.8 [150eb455] + CoordinateTransformations v0.6.4 [587fd27a] + CovarianceEstimation v0.2.13 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.42 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ced4e74d] + DistributionsAD v0.6.57 [ffbed154] + DocStringExtensions v0.9.3 [732a3c5d] + EarthOrientation v0.7.3 [4e289a0a] + EnumX v1.0.4 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.5 [e189563c] + ExternalDocstrings v0.1.1 [7a1cc6ca] + FFTW v1.8.1 [525bcba6] + FITSIO v0.17.4 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.16.6 [48062228] + FilePathsBase v0.9.23 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [41a02a25] + Folds v0.2.10 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v0.10.38 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.5 [f67ccb44] + HDF5 v0.17.2 [5a3ac768] + HORIZONS v0.4.8 [cd3eb016] + HTTP v1.10.15 [34004b35] + 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MCMCDiagnosticTools v0.3.14 [e80e1ace] + MLJModelInterface v1.11.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [dbb5928d] + MappedArrays v0.4.2 [0a4f8689] + MathTeXEngine v0.6.2 [739be429] + MbedTLS v1.1.9 [c03570c3] + Memoize v0.4.4 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [d9ec5142] + NamedTupleTools v0.14.3 [c020b1a1] + NaturalSort v1.0.0 [daf3887e] + Octofitter v5.2.1 [6fe1bfb0] + OffsetArrays v1.15.0 [4d8831e6] + OpenSSL v1.4.3 [429524aa] + Optim v1.11.0 [7f7a1694] + Optimization v4.1.1 [bca83a33] + OptimizationBase v2.4.0 [36348300] + OptimizationOptimJL v0.4.1 [fbd9d27c] + OptionalData v1.0.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [ce719bf2] + PSIS v0.9.7 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [b1d3bc72] + Pathfinder v0.9.9 [fd6f9641] + PlanetOrbits v0.10.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.4 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.30.0 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [05181044] + RelocatableFolders v1.0.1 [cbe49d4c] + RemoteFiles v0.5.0 [ae029012] + Requires v1.3.0 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.5 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [0bca4576] + SciMLBase v2.75.0 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.1 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [9f842d2f] + SparseConnectivityTracer v0.6.13 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.13 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.4.0 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [88034a9c] + StringDistances v0.11.3 [892a3eda] + StringManipulation v0.4.1 ⌃ [09ab397b] + StructArrays v0.6.21 [2efcf032] + SymbolicIndexingInterface v0.3.38 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [5d786b92] + TerminalLoggers v0.1.7 [24d252fe] + ThreadedScans v0.1.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [9d95f2ec] 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[2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.33s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 30 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#645 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 #726 at ./asyncevent.jl:304 jfptr_YY.726_76089.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 task_done_hook at ./task.jl:682 jfptr_task_done_hook_75545.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_finish_task at /source/src/task.c:327 start_task at /source/src/task.c:1267 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000711a883b55f0 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:682; task_done_hook(t::Task) ╎ 1 @Base/task.jl:1008; wait() ╎ 1 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized{Task}) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007dff588c8010 Total snapshots: 156. Utilization: 0% ╎156 @Base/asyncevent.jl:304; (::Base.var"#726#727"{FileWatching.Pidfile.var… ╎ 156 @Base/asyncevent.jl:142; _trywait(t::Timer) ╎ 156 @Base/condition.jl:125; wait ╎ 156 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S… ╎ 156 @Base/task.jl:1008; wait() 155╎ 156 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized… [30] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:152 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 poptask at ./task.jl:999 wait at ./task.jl:1008 wait at ./task.jl:1008 #wait#645 at ./condition.jl:130 #wait#645 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 _trywait at ./asyncevent.jl:142 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 #1056 at ./Base.jl:608 #1056 at ./Base.jl:608 jfptr_YY.1056_85200.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jfptr_YY.1056_85200.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 7095008 (Pool: 7078301; Big: 16707); GC: 11 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 21584630 (Pool: 21510560; Big: 74070); GC: 27 ┌ Warning: Failed to clean up temporary path "/tmp/jl_UxeyGm" │ ErrorException("schedule: Task not runnable") └ @ Base.Filesystem file.jl:549 schedule: Task not runnable PkgEval terminated after 2755.68s: test duration exceeded the time limit