Package evaluation of NetCDFTools on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T11:34:12.680 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.25s ################################################################################ # Installation # Installing NetCDFTools... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [13b2da74] + NetCDFTools v0.2.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [179af706] + CFTime v0.1.4 [324d7699] + CategoricalArrays v0.10.8 [1fbeeb36] + CommonDataModel v0.3.7 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [3c3547ce] + DiskArrays v0.4.10 [ffbed154] + DocStringExtensions v0.9.3 [c27321d9] + Glob v1.3.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [e58298cb] + Ipaper v0.2.4 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [8ac3fa9e] + LRUCache v1.6.1 [b964fa9f] + LaTeXStrings v1.4.0 [fcefd6c4] + LambdaFn v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.6 [13b2da74] + NetCDFTools v0.2.1 [6fe1bfb0] + OffsetArrays v1.15.0 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3a884ed6] + UnPack v1.0.2 [0b7ba130] + Blosc_jll v1.21.6+2 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.2+1 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌃ [7243133f] + NetCDF_jll v400.902.209+0 [fe0851c0] + OpenMPI_jll v5.0.7+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 64.17s ################################################################################ # Testing # Testing NetCDFTools Status `/tmp/jl_JjZqt3/Project.toml` [179af706] CFTime v0.1.4 [a93c6f00] DataFrames v1.7.0 [ffbed154] DocStringExtensions v0.9.3 [e58298cb] Ipaper v0.2.4 [85f8d34a] NCDatasets v0.14.6 [13b2da74] NetCDFTools v0.2.1 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.2.1 [92933f4c] ProgressMeter v1.10.2 [189a3867] Reexport v1.2.2 [2913bbd2] StatsBase v0.34.4 [ade2ca70] Dates [8ba89e20] Distributed [de0858da] Printf [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_JjZqt3/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [179af706] CFTime v0.1.4 [324d7699] CategoricalArrays v0.10.8 [1fbeeb36] CommonDataModel v0.3.7 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [3c3547ce] DiskArrays v0.4.10 [ffbed154] DocStringExtensions v0.9.3 [c27321d9] Glob v1.3.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [e58298cb] Ipaper v0.2.4 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [8ac3fa9e] LRUCache v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [fcefd6c4] LambdaFn v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.6 [13b2da74] NetCDFTools v0.2.1 [6fe1bfb0] OffsetArrays v1.15.0 [bac558e1] OrderedCollections v1.8.0 [d96e819e] Parameters v0.12.3 [eebad327] PkgVersion v0.3.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3a884ed6] UnPack v1.0.2 [0b7ba130] Blosc_jll v1.21.6+2 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] HDF5_jll v1.14.2+1 [e33a78d0] Hwloc_jll v2.12.0+0 [1d63c593] LLVMOpenMP_jll v18.1.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+0 [f1f71cc9] MPItrampoline_jll v5.5.2+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 ⌃ [7243133f] NetCDF_jll v400.902.209+0 [fe0851c0] OpenMPI_jll v5.0.7+0 [458c3c95] OpenSSL_jll v3.0.16+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Reading data... 4.947357 seconds (3.14 M allocations: 209.487 MiB, 2.37% gc time, 99.69% compilation time) Writing data... 7.606268 seconds (3.90 M allocations: 264.385 MiB, 6.10% gc time, 99.87% compilation time) Test Summary: | Pass Total Time nc_combine | 1 1 24.4s Reading dims... 0.001262 seconds (917 allocations: 76.164 KiB) Reading data... 0.254867 seconds (69.51 k allocations: 4.701 MiB, 6.83% gc time, 99.74% compilation time) Writing data... 1.689924 seconds (382.68 k allocations: 26.146 MiB, 99.61% compilation time) Test Summary: | Pass Total Time nc_subset | 1 1 5.6s Array{Float64, 3} | (70, 40, 365) | 7.8 Mb [running] : test_year.nc Reading data... Processing ... 5.093114 seconds (850.09 k allocations: 55.390 MiB, 0.60% gc time, 99.93% compilation time) Writing data... 0.019015 seconds (1.91 k allocations: 148.555 KiB, 78.80% compilation time) [running] : test_mon.nc Reading data... Processing ... 0.005120 seconds (73 allocations: 320.750 KiB) Writing data... 0.004391 seconds (792 allocations: 307.992 KiB) Test Summary: | Pass Total Time nc_agg | 2 2 18.6s Test Summary: | Pass Total Time updateMask | 2 2 4.9s Test Summary: | Pass Total Time split_chunk | 4 4 1.6s Test Summary: | Pass Total Time weighted_nanmean | 2 2 0.6s Test Summary: | Pass Total Time azimuth | 8 8 0.4s Progress: 1%|▋ | ETA: 0:13:42 Progress: 73%|█████████████████████████████▉ | ETA: 0:00:06 Progress: 89%|████████████████████████████████████▋ | ETA: 0:00:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:15 Progress: 16%|██████▊ | ETA: 0:00:01 Progress: 31%|████████████▉ | ETA: 0:00:00 Progress: 46%|██████████████████▊ | ETA: 0:00:00 Progress: 58%|███████████████████████▊ | ETA: 0:00:00 Progress: 66%|███████████████████████████▎ | ETA: 0:00:00 Progress: 75%|██████████████████████████████▊ | ETA: 0:00:00 Progress: 87%|███████████████████████████████████▊ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Progress: 1%|▋ | ETA: 0:03:57 Progress: 9%|███▌ | ETA: 0:00:38 Progress: 20%|████████▎ | ETA: 0:00:15 Progress: 34%|█████████████▊ | ETA: 0:00:08 Progress: 46%|███████████████████ | ETA: 0:00:05 Progress: 58%|███████████████████████▊ | ETA: 0:00:03 Progress: 66%|███████████████████████████ | ETA: 0:00:02 Progress: 74%|██████████████████████████████▏ | ETA: 0:00:02 Progress: 85%|██████████████████████████████████▉ | ETA: 0:00:01 Progress: 99%|████████████████████████████████████████▊| ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Progress: 1%|▋ | ETA: 0:00:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 0.650569 seconds (217.89 k allocations: 15.961 MiB, 7.54% gc time, 95.66% compilation time) Test Summary: | Pass Total Time spInterp | 3 3 24.8s Test Summary: | Pass Total Time nanmean | 2 2 0.1s Progress: 25%|██████████▎ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time bilinear | 3 3 4.4s Test Summary: | Pass Total Time bilinear vs. cdo | 1 1 4.7s Test Summary: | Pass Total Time nc_date | 3 3 0.1s ncatt_put: Error During Test at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:1 Got exception outside of a @test NetCDF error: Opening path /home/pkgeval/.julia/packages/NetCDFTools/thncB//data/HI_tasmax_day_ACCESS-CM2_historical_r1i1p1f1_gn_18500101.nc: NetCDF: HDF error (NetCDF error code: -101) Stacktrace: [1] nc_open(path::String, mode::UInt16) @ NCDatasets ~/.julia/packages/NCDatasets/LjXBn/src/netcdf_c.jl:276 [2] NCDatasets.NCDataset(filename::String, mode::String; format::Symbol, share::Bool, diskless::Bool, persist::Bool, memory::Nothing, maskingvalue::Missing, attrib::Vector{Any}) @ NCDatasets ~/.julia/packages/NCDatasets/LjXBn/src/dataset.jl:212 [3] NCDataset @ ~/.julia/packages/NCDatasets/LjXBn/src/dataset.jl:171 [inlined] [4] #nc_open#13 @ ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:21 [inlined] [5] nc_open(f::String, args::String) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:20 [6] nc_open(::NetCDFTools.var"#62#63"{Dict{String, String}}, ::String, ::Vararg{String}; kwargs::@Kwargs{}) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:25 [7] nc_open @ ~/.julia/packages/NetCDFTools/thncB/src/nc_info.jl:24 [inlined] [8] ncatt_put(f::String, atts::Dict{String, String}) @ NetCDFTools ~/.julia/packages/NetCDFTools/thncB/src/ncatt_put.jl:9 [9] macro expansion @ ~/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:4 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [11] top-level scope @ ~/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:2 [12] include(fname::String) @ Base.MainInclude ./client.jl:494 [13] top-level scope @ ~/.julia/packages/NetCDFTools/thncB/test/runtests.jl:18 [14] include(fname::String) @ Base.MainInclude ./client.jl:494 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:385 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:557 Test Summary: | Error Total Time ncatt_put | 1 1 2.8s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/test-ncatt.jl:1 in expression starting at /home/pkgeval/.julia/packages/NetCDFTools/thncB/test/runtests.jl:18 Testing failed after 116.18s ERROR: LoadError: Package NetCDFTools errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 231.42s: package tests unexpectedly errored