Package evaluation of MotifCluster on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T08:54:57.269 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.34s ################################################################################ # Installation # Installing MotifCluster... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [daa9fd3b] + MotifCluster v0.2.3 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 ⌅ [4c88cf16] + Aqua v0.6.7 [ec485272] + ArnoldiMethod v0.4.0 [aaaa29a8] + Clustering v0.15.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [86223c79] + Graphs v1.12.0 [34004b35] + HypergeometricFunctions v0.3.27 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [daa9fd3b] + MotifCluster v0.2.3 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 25.49s ################################################################################ # Testing # Testing MotifCluster Status `/tmp/jl_ubBBlj/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [aaaa29a8] Clustering v0.15.8 [31c24e10] Distributions v0.25.117 [86223c79] Graphs v1.12.0 [daa9fd3b] MotifCluster v0.2.3 [37e2e46d] LinearAlgebra [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_ubBBlj/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [4c88cf16] Aqua v0.6.7 [ec485272] ArnoldiMethod v0.4.0 [aaaa29a8] Clustering v0.15.8 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [86223c79] Graphs v1.12.0 [34004b35] HypergeometricFunctions v0.3.27 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [daa9fd3b] MotifCluster v0.2.3 [b8a86587] NearestNeighbors v0.4.21 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4]: Test Failed at /home/pkgeval/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:25 Expression: result ⊜ true Evaluated: ⟪result: 😭 FAILED: MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4] Some package(s) in `deps` of MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4] are not loaded during via `using MotifCluster`. * Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] To ignore from stale dependency detection, pass the package name to `ignore` keyword argument of `Aqua.test_stale_deps` ⟫ ⊜ true Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:25 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1669 [inlined] [4] test_stale_deps(packages::Module; kwargs::@Kwargs{ignore::Vector{Symbol}}) @ Aqua ~/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:23 Test Summary: | Pass Fail Total Time MotifCluster | 719 1 720 3m20.9s MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4] | 1 1 0.0s MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4] | 1 1 3.3s MotifCluster [daa9fd3b-41af-4965-b715-a21506bae1e4] | 1 1 0.0s /home/pkgeval/.julia/packages/MotifCluster/BEzjj/Project.toml | 1 1 0.0s /home/pkgeval/.julia/packages/MotifCluster/BEzjj/docs/Project.toml | 1 1 0.0s Clustering | 541 541 1m36.8s cluster_spectrum | 1 1 32.7s run_motif_clustering | 540 540 1m04.1s Indicators | 11 11 3.0s Spectral | 38 38 26.4s get_first_eigs | 2 2 3.6s build_laplacian | 6 6 8.6s run_laplace_embedding | 8 8 0.6s run_mot_embedding_restrict | 14 14 11.7s run_mot_embedding_no_restrict | 8 8 1.9s Motif Adjacency | 102 102 1.2s mam_unweighted_func | 17 17 0.7s mam_unweighted_struc | 17 17 0.0s mam_mean_weighted_func | 17 17 0.4s mam_mean_weighted_struc | 17 17 0.0s mam_product_weighted_func | 17 17 0.0s mam_product_weighted_struc | 17 17 0.0s Utils | 5 5 3.6s a_b_one | 1 1 0.3s a_one_b | 1 1 0.3s dropzeros_killdiag | 1 1 0.1s get_largest_component | 2 2 2.9s Clustering | 15 15 31.1s sample_dsbm_unweighted | 2 2 5.3s sample_dsbm_constant_weighted | 2 2 1.8s sample_dsbm_poisson_weighted | 3 3 1.5s sample_dsbm_large | 1 1 0.8s sample_bsbm_unweighted | 2 2 5.6s sample_bsbm_constant_weighted | 2 2 14.1s sample_bsbm_poisson_weighted | 3 3 2.1s ERROR: LoadError: Some tests did not pass: 719 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MotifCluster/BEzjj/test/runtests.jl:9 Testing failed after 213.75s ERROR: LoadError: Package MotifCluster errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 272.03s: package has test failures