Package evaluation of LinearFold on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:22:32.539


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.18s


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# Installation
#

Installing LinearFold...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [aebc047d] + LinearFold v0.3.2
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [67c07d97] + Automa v1.1.0
  [47718e42] + BioGenerics v0.1.5
  [c2308a5c] + FASTX v2.1.7
  [692b3bcd] + JLLWrappers v1.7.0
  [aebc047d] + LinearFold v0.3.2
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [fdea26ae] + SIMD v3.7.1
  [354b36f9] + StringViews v1.3.4
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.22.0
  [492392ba] + LinearFold_jll v1.0.0+0
  [e9cb6f04] + LinearPartition_jll v1.0.0+0
  [be43c337] + LinearSampling_jll v1.0.0+0
  [cd7c2323] + LinearTurboFold_jll v0.0.1+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2

Installation completed after 6.23s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 24.47s


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# Testing
#

     Testing LinearFold
      Status `/tmp/jl_mglxlT/Project.toml`
  [4c88cf16] Aqua v0.8.11
  [c2308a5c] FASTX v2.1.7
  [aebc047d] LinearFold v0.3.2
  [1986cc42] Unitful v1.22.0
  [492392ba] LinearFold_jll v1.0.0+0
  [e9cb6f04] LinearPartition_jll v1.0.0+0
  [be43c337] LinearSampling_jll v1.0.0+0
  [cd7c2323] LinearTurboFold_jll v0.0.1+0
  [2f01184e] SparseArrays v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_mglxlT/Manifest.toml`
  [4c88cf16] Aqua v0.8.11
  [67c07d97] Automa v1.1.0
  [47718e42] BioGenerics v0.1.5
  [34da2185] Compat v4.16.0
  [c2308a5c] FASTX v2.1.7
  [692b3bcd] JLLWrappers v1.7.0
  [aebc047d] LinearFold v0.3.2
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [fdea26ae] SIMD v3.7.1
  [354b36f9] StringViews v1.3.4
  [3bb67fe8] TranscodingStreams v0.11.3
  [1986cc42] Unitful v1.22.0
  [492392ba] LinearFold_jll v1.0.0+0
  [e9cb6f04] LinearPartition_jll v1.0.0+0
  [be43c337] LinearSampling_jll v1.0.0+0
  [cd7c2323] LinearTurboFold_jll v0.0.1+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
     Testing Running tests...
  testing LinearFold
    testing Aqua.test_all
    testing energy
    testing mfe
    testing zuker_subopt
    testing partfn
    testing bpp
    testing mea
    testing threshknot
    testing sample_structures
    testing turbofold
Test Summary:       | Pass  Total     Time
LinearFold          | 3848   3848  1m40.5s
  Aqua.test_all     |   11     11    38.7s
  energy            |   27     27     5.0s
  mfe               |  216    216     2.1s
  zuker_subopt      |  324    324     1.2s
  partfn            |   54     54     0.6s
  bpp               |  432    432     2.1s
  mea               |  216    216     1.3s
  threshknot        |  432    432     1.5s
  sample_structures |  216    216     3.9s
  turbofold         | 1920   1920    43.8s
     Testing LinearFold tests passed 

Testing completed after 103.91s

PkgEval succeeded after 149.6s