Package evaluation of JumpProcesses on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T11:02:41.669


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.27s


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# Installation
#

Installing JumpProcesses...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [ccbc3e58] + JumpProcesses v9.14.2
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.13.0
  [7d9f7c33] + Accessors v0.1.41
  [79e6a3ab] + Adapt v4.2.0
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.18.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [38540f10] + CommonSolve v0.2.4
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [2b5f629d] + DiffEqBase v6.164.1
  [ffbed154] + DocStringExtensions v0.9.3
  [4e289a0a] + EnumX v1.0.4
  [f151be2c] + EnzymeCore v0.8.8
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [a4df4552] + FastPower v1.1.1
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [86223c79] + Graphs v1.12.0
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.5
  [3587e190] + InverseFunctions v0.1.17
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [ae98c720] + Jieko v0.2.1
  [ccbc3e58] + JumpProcesses v9.14.2
  [10f19ff3] + LayoutPointers v0.1.17
  [1914dd2f] + MacroTools v0.5.15
  [d125e4d3] + ManualMemory v0.1.8
  [2e0e35c7] + Moshi v0.3.5
  [46d2c3a1] + MuladdMacro v0.2.4
  [bac558e1] + OrderedCollections v1.8.0
  [d96e819e] + Parameters v0.12.3
  [e409e4f3] + PoissonRandom v0.4.4
  [f517fe37] + Polyester v0.7.16
  [1d0040c9] + PolyesterWeave v0.2.2
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
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  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.30.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
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  [efcf1570] + Setfield v1.1.1
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  [aedffcd0] + Static v1.1.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.12
  [1e83bf80] + StaticArraysCore v1.4.3
  [7792a7ef] + StrideArraysCore v0.5.7
  [2efcf032] + SymbolicIndexingInterface v0.3.38
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [8290d209] + ThreadingUtilities v0.5.2
  [781d530d] + TruncatedStacktraces v1.4.0
  [3a884ed6] + UnPack v1.0.2
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf
  [9a3f8284] + Random
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  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
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  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs
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  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
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  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0

Installation completed after 7.62s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 19.25s


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# Testing
#

     Testing JumpProcesses
      Status `/tmp/jl_jDknqV/Project.toml`
  [4fba245c] ArrayInterface v7.18.0
  [864edb3b] DataStructures v0.18.20
  [2b5f629d] DiffEqBase v6.164.1
  [459566f4] DiffEqCallbacks v4.3.0
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  [7034ab61] FastBroadcast v0.3.5
  [069b7b12] FunctionWrappers v1.1.3
  [86223c79] Graphs v1.12.0
  [ccbc3e58] JumpProcesses v9.14.2
  [7ed4a6bd] LinearSolve v3.3.1
  [1dea7af3] OrdinaryDiffEq v6.91.0
  [e409e4f3] PoissonRandom v0.4.4
  [e6cf234a] RandomNumbers v1.6.0
  [731186ca] RecursiveArrayTools v3.30.0
  [189a3867] Reexport v1.2.2
  [1bc83da4] SafeTestsets v0.1.0
  [0bca4576] SciMLBase v2.75.0
  [efcf1570] Setfield v1.1.1
  [860ef19b] StableRNGs v1.0.2
  [90137ffa] StaticArrays v1.9.12
  [789caeaf] StochasticDiffEq v6.74.0
  [2efcf032] SymbolicIndexingInterface v0.3.38
  [3a884ed6] UnPack v1.0.2
  [37e2e46d] LinearAlgebra
  [d6f4376e] Markdown
  [9a3f8284] Random
  [10745b16] Statistics v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_jDknqV/Manifest.toml`
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  [7d9f7c33] Accessors v0.1.41
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  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [2b5f629d] DiffEqBase v6.164.1
  [459566f4] DiffEqCallbacks v4.3.0
  [77a26b50] DiffEqNoiseProcess v5.24.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.6.42
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.117
  [ffbed154] DocStringExtensions v0.9.3
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  [e2ba6199] ExprTools v0.1.10
  [55351af7] ExproniconLite v0.10.14
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [442a2c76] FastGaussQuadrature v1.0.2
  [a4df4552] FastPower v1.1.1
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.27.0
  [f6369f11] ForwardDiff v0.10.38
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  [86223c79] Graphs v1.12.0
  [34004b35] HypergeometricFunctions v0.3.27
  [615f187c] IfElse v0.1.1
  [d25df0c9] Inflate v0.1.5
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  [77ba4419] NaNMath v1.1.2
  [8913a72c] NonlinearSolve v4.4.0
  [be0214bd] NonlinearSolveBase v1.5.0
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  [9a2c21bd] NonlinearSolveQuasiNewton v1.2.0
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  [429524aa] Optim v1.11.0
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  [101fe9f7] OrdinaryDiffEqFeagin v1.1.0
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  [af6ede74] OrdinaryDiffEqRKN v1.1.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.6.0
  [2d112036] OrdinaryDiffEqSDIRK v1.2.0
  [669c94d9] OrdinaryDiffEqSSPRK v1.2.0
  [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.2.0
  [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.1.1
  [90014a1f] PDMats v0.11.32
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
  [e409e4f3] PoissonRandom v0.4.4
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  [4607b0f0] SuiteSparse
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     Testing Running tests...
  0.854506 seconds (2.66 M allocations: 315.242 MiB, 5.27% gc time, 7.26% compilation time)
  0.240105 seconds (720.71 k allocations: 58.092 MiB, 12.85% gc time)
Test Summary:       | Pass  Total   Time
Constant Rate Tests |    2      2  20.5s
 20.991819 seconds (9.03 M allocations: 750.691 MiB, 4.49% gc time, 45.63% compilation time)
┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier.
│   caller = _process_AD_choice(ad_alg::Bool, chunksize::Val{0}, diff_type::Val{:forward}) at misc_utils.jl:152
└ @ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/yTEch/src/misc_utils.jl:152
WARNING: Method definition affect2!(Any) in module ##Variable Rate Tests#226 at /home/pkgeval/.julia/packages/JumpProcesses/8hlx3/test/variable_rate.jl:94 overwritten at /home/pkgeval/.julia/packages/JumpProcesses/8hlx3/test/variable_rate.jl:102.
Test Summary:       | Pass  Total     Time
Variable Rate Tests |   33     33  8m43.8s
523.796640 seconds (320.96 M allocations: 23.155 GiB, 2.44% gc time, 69.35% compilation time)
Test Summary:           | Pass  Total     Time
ExtendedJumpArray Tests |   18     18  1m01.1s
 61.102902 seconds (30.36 M allocations: 1.917 GiB, 2.99% gc time, 99.83% compilation time)
Test Summary:         | Pass  Total  Time
FunctionWrapper Tests |    7      7  2.9s
  2.935926 seconds (1.06 M allocations: 71.986 MiB, 18.41% gc time, 98.20% compilation time)
Test Summary:     | Pass  Total   Time
Monte Carlo Tests |    2      2  56.8s
 56.844930 seconds (13.99 M allocations: 800.493 MiB, 1.03% gc time, 99.88% compilation time)
  4.837227 seconds (1.97 M allocations: 137.642 MiB, 1.95% gc time, 99.99% compilation time)
  6.263752 seconds (4.95 M allocations: 322.404 MiB, 3.73% gc time, 99.95% compilation time)
Test Summary:       | Pass  Total     Time
Split Coupled Tests |    5      5  1m17.3s
 77.272271 seconds (26.00 M allocations: 1.681 GiB, 3.33% gc time, 94.73% compilation time)
Test Summary: | Pass  Total  Time
SSA Tests     |    9      9  1.4s
  1.375983 seconds (869.39 k allocations: 59.118 MiB, 97.08% compilation time)
┌ Warning: The RegularJump interface has changed to be matrix-free. See the documentation for more details.
└ @ JumpProcesses ~/.julia/packages/JumpProcesses/8hlx3/src/jumps.jl:256
Test Summary:     |Time
Tau Leaping Tests | None  1.5s
  1.479357 seconds (599.70 k allocations: 40.545 MiB, 2.25% gc time, 98.68% compilation time)
Test Summary:            | Pass  Total   Time
Simple SSA Callback Test |  128    128  12.8s
 12.834408 seconds (6.06 M allocations: 407.272 MiB, 1.17% gc time, 98.90% compilation time)
Test Summary:              |Time
SIR Discrete Callback Test | None  5.0s
  5.014031 seconds (2.76 M allocations: 193.749 MiB, 1.49% gc time, 99.54% compilation time)
Test Summary:            | Pass  Total     Time
Linear Reaction SSA Test |   42     42  1m11.9s
 71.920116 seconds (441.19 M allocations: 7.871 GiB, 3.69% gc time, 37.51% compilation time)
Test Summary:                           | Pass  Total     Time
Mass Action Jump Tests; Gene Expr Model |   45     45  9m06.4s
546.417092 seconds (30.54 M allocations: 1.761 GiB, 0.19% gc time, 8.12% compilation time)
Test Summary:                              | Pass  Total   Time
Mass Action Jump Tests; Nonlinear Rx Model |   27     27  54.2s
 54.163487 seconds (12.93 M allocations: 999.282 MiB, 0.77% gc time, 2.55% compilation time)
Test Summary:                         | Pass  Total   Time
Mass Action Jump Tests; Special Cases |   21     21  10.1s
 10.148699 seconds (4.25 M allocations: 347.990 MiB, 1.24% gc time, 94.13% compilation time)
Test Summary:           | Pass  Total   Time
Direct allocations test |   13     13  20.5s
 20.500977 seconds (5.50 M allocations: 374.405 MiB, 0.92% gc time, 86.14% compilation time)
Test Summary:    | Pass  Total  Time
Bracketing Tests |   26     26  1.1s
  1.124305 seconds (203.26 k allocations: 13.737 MiB, 92.85% compilation time)
Test Summary:                     | Pass  Total  Time
Composition-Rejection Table Tests |   26     26  4.4s
  4.439631 seconds (30.20 M allocations: 618.757 MiB, 4.23% gc time, 14.98% compilation time)
Test Summary:   | Pass  Total   Time
Extinction test |  292    292  16.9s
 16.943109 seconds (5.61 M allocations: 381.668 MiB, 0.69% gc time, 90.55% compilation time)
Test Summary:          | Pass  Total  Time
Saveat Regression test |  202    202  5.0s
  4.999998 seconds (12.40 M allocations: 531.622 MiB, 19.75% gc time, 48.98% compilation time)
Test Summary:       | Pass  Total   Time
Save_positions test |   22     22  10.3s
 10.356124 seconds (5.95 M allocations: 409.219 MiB, 2.79% gc time, 99.29% compilation time)
Test Summary:            | Pass  Total  Time
Ensemble Uniqueness test |    8      8  4.0s
  3.999633 seconds (1.58 M allocations: 110.665 MiB, 2.60% gc time, 98.86% compilation time)
Test Summary:      | Time
Thread Safety test | None  17.7s
 17.666839 seconds (8.01 M allocations: 515.192 MiB, 2.10% gc time, 99.79% compilation time)
Test Summary: | Pass  Total     Time
A + B <--> C  |   13     13  1m34.8s
 94.773433 seconds (2.18 M allocations: 194.387 MiB, 0.12% gc time, 2.09% compilation time)
Test Summary: | Pass  Total   Time
Remake tests  |   23     23  38.0s
 38.045909 seconds (15.55 M allocations: 997.578 MiB, 1.49% gc time, 99.62% compilation time)
Test Summary:                 | Pass  Total   Time
Symbol based problem indexing |   41     41  10.4s
 10.416060 seconds (3.45 M allocations: 238.122 MiB, 9.44% gc time, 98.77% compilation time)
Test Summary:           | Pass  Total   Time
Long time accuracy test |    1      1  51.6s
 51.617737 seconds (173.54 k allocations: 11.341 MiB, 1.17% compilation time)
Test Summary:  | Pass  Total   Time
Hawkes process |   12     12  34.2s
 34.246669 seconds (19.24 M allocations: 2.336 GiB, 4.72% gc time, 80.15% compilation time)
Test Summary:  | Pass  Total  Time
Reaction rates |  218    218  4.2s
  4.243930 seconds (3.39 M allocations: 76.719 MiB, 33.69% compilation time)
Test Summary: | Pass  Total   Time
Hop rates     |  292    292  10.0s
  9.968080 seconds (4.81 M allocations: 260.792 MiB, 8.54% gc time, 97.79% compilation time)
Test Summary: | Pass  Total   Time
Topology      |  246    246  27.9s
 27.931225 seconds (29.37 M allocations: 563.645 MiB, 3.21% gc time, 11.49% compilation time)
Test Summary:            | Pass  Total  Time
Spatial bracketing Tests |    6      6  0.9s
  0.922277 seconds (280.25 k allocations: 18.949 MiB, 96.44% compilation time)
Test Summary:        | Pass  Total   Time
Spatial A + B <--> C |   12     12  43.0s
 43.003639 seconds (2.12 M allocations: 144.750 MiB, 0.13% gc time, 18.05% compilation time)
Test Summary:                    | Pass  Total   Time
Spatially Varying Reaction Rates |   55     55  52.4s
 52.444768 seconds (8.47 M allocations: 592.014 MiB, 0.85% gc time, 35.15% compilation time)
Test Summary:  | Pass  Total     Time
Pure diffusion |  210    210  1m06.4s
 66.394164 seconds (16.83 M allocations: 2.001 GiB, 1.32% gc time, 52.11% compilation time)
1960.340401 seconds (1.08 G allocations: 50.219 GiB, 1.65% gc time, 45.54% compilation time)
     Testing JumpProcesses tests passed 

Testing completed after 1964.19s

PkgEval succeeded after 2015.64s