Package evaluation of JuliaBUGS on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T13:21:59.059 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.11s ################################################################################ # Installation # Installing JuliaBUGS... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [ba9fb4c0] + JuliaBUGS v0.8.2 Updating `~/.julia/environments/v1.10/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [80f14c24] + AbstractMCMC v5.6.0 ⌅ [7a57a42e] + AbstractPPL v0.9.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.3 [9718e550] + Baselet v0.1.1 ⌅ [76274a88] + Bijectors v0.14.2 [082447d4] + ChainRules v1.72.2 [d360d2e6] + ChainRulesCore v1.25.1 [9e997f8a] + ChangesOfVariables v0.1.9 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [e30172f5] + Documenter v1.8.1 [5789e2e9] + FileIO v1.16.6 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [d7ba0133] + Git v1.3.1 [86223c79] + Graphs v1.12.0 [34004b35] + HypergeometricFunctions v0.3.27 [b5f81e59] + IOCapture v0.2.5 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.11 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [ba9fb4c0] + JuliaBUGS v0.8.2 [70703baa] + JuliaSyntax v0.4.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.15 [dbb5928d] + MappedArrays v0.4.2 [d0879d2d] + MarkdownAST v0.1.2 [fa8bd995] + MetaGraphsNext v0.7.1 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.0 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.5 [efcf1570] + Setfield v1.1.1 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 ⌃ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.47.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 267.06s ################################################################################ # Testing # Testing JuliaBUGS Status `/tmp/jl_DnvOpy/Project.toml` [47edcb42] ADTypes v1.13.0 [80f14c24] AbstractMCMC v5.6.0 ⌅ [7a57a42e] AbstractPPL v0.9.0 [7d9f7c33] Accessors v0.1.41 [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.6 [198e06fe] BangBang v0.4.3 ⌅ [76274a88] Bijectors v0.14.2 [31c24e10] Distributions v0.25.117 [e30172f5] Documenter v1.8.1 [86223c79] Graphs v1.12.0 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.8.2 [70703baa] JuliaSyntax v0.4.10 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.0 [2ab3a3ac] LogExpFunctions v0.3.29 [c7f686f2] MCMCChains v6.0.7 [1914dd2f] MacroTools v0.5.15 [fa8bd995] MetaGraphsNext v0.7.1 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [37e2e3b7] ReverseDiff v1.15.3 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [37e2e46d] LinearAlgebra [9a3f8284] Random [9e88b42a] Serialization [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_DnvOpy/Manifest.toml` [47edcb42] ADTypes v1.13.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.6.0 ⌅ [7a57a42e] AbstractPPL v0.9.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.41 [79e6a3ab] Adapt v4.2.0 [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.6 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.4.0 [ec485272] ArnoldiMethod v0.4.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.3 [9718e550] Baselet v0.1.1 ⌅ [76274a88] Bijectors v0.14.2 [082447d4] ChainRules v1.72.2 [d360d2e6] ChainRulesCore v1.25.1 [9e997f8a] ChangesOfVariables v0.1.9 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.8.1 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.16.6 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.3.1 [86223c79] Graphs v1.12.0 [34004b35] HypergeometricFunctions v0.3.27 [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [505f98c9] InplaceOps v0.3.0 [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.8.2 [70703baa] JuliaSyntax v0.4.10 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [c7f686f2] MCMCChains v6.0.7 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.0 [1914dd2f] MacroTools v0.5.15 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 [fa8bd995] MetaGraphsNext v0.7.1 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [c020b1a1] NaturalSort v1.0.0 [6fe1bfb0] OffsetArrays v1.15.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.0 [37e2e3b7] ReverseDiff v1.15.3 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.5 [30f210dd] ScientificTypesBase v3.0.0 [efcf1570] Setfield v1.1.1 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.4.0 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [892a3eda] StringManipulation v0.4.1 ⌃ [09ab397b] StructArrays v0.6.21 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [efce3f68] WoodburyMatrices v1.0.0 [2e619515] Expat_jll v2.6.5+0 [f5851436] FFTW_jll v3.3.10+3 [f8c6e375] Git_jll v2.47.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.0.1+1 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: progress logging is disabled globally [ Info: Running tests for groups: all ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/iwb7N/src/utilities/utilities.jl:651 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Unit Tests | 5 5 45.3s Test Summary: | Pass Total Time Parser | 91 91 25.4s Test Summary: | Pass Total Time CollectVariables Error Cases | 4 4 3.8s Test Summary: | Pass Total Time is_specified_by_data | 14 14 0.4s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'a' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Constant propagation | 5 5 4.1s Test Summary: | Pass Total Time CheckRepeatedAssignments | 7 7 9.5s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:25 Test Summary: | Pass Total Time lower bound greater than upper bound | 2 2 3.9s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'rtx[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'T[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'z[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'log.Base4[1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'r[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 Test Summary: | Time BUGS examples volume 1 | None 4m56.4s ┌ Warning: `cholesky(A::Union{StridedMatrix, RealHermSymComplexHerm{<:Real, <:StridedMatrix}}, ::Val{false}; check::Bool = true)` is deprecated, use `cholesky(A, NoPivot(); check)` instead. │ caller = #rrule#1203 at factorization.jl:498 [inlined] └ @ Core ~/.julia/packages/ChainRules/sm2ny/src/rulesets/LinearAlgebra/factorization.jl:498 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'b' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Some corner cases | 16 16 1m01.1s Test Summary: | Pass Total Time Log density | 22 22 23.2s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/mYMD7/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Log density of BUGS models | 16 16 11.0s Test Summary: | Pass Total Time serialization | 374 374 9.0s Test Summary: | Pass Total Time controlling sampling behavior for conditioned variables | 4 4 3.2s Test Summary: | Pass Total Time `evaluate!!` is actually modifying returned `evaluation_env` | 1 1 6.9s Test Summary: | Pass Total Time logprior and loglikelihood | 3 3 6.7s Test Summary: | Pass Total Time Simple gibbs | 5 5 4m57.1s [ Info: Found initial step size 0.2 Sampling 0%| | ETA: 3:50:42 iterations: 2 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 15 is_accept: true acceptance_rate: 0.9113143353229931 log_density: -20.260946920693197 hamiltonian_energy: 23.298120772906746 hamiltonian_energy_error: -0.2535869671793485 max_hamiltonian_energy_error: -0.3228711869597447 tree_depth: 3 numerical_error: false step_size: 0.298730472372491 nom_step_size: 0.298730472372491 is_adapt: false mass_matrix: DiagEuclideanMetric([0.10119426221796951, 0.008 ...])                                   Sampling 100%|███████████████████████████████| Time: 0:00:16 iterations: 2000 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 15 is_accept: true acceptance_rate: 0.9989591533847553 log_density: -22.523328973057083 hamiltonian_energy: 24.071280575927545 hamiltonian_energy_error: -0.15536106185423648 max_hamiltonian_energy_error: -0.5461471616490741 tree_depth: 4 numerical_error: false step_size: 0.298730472372491 nom_step_size: 0.298730472372491 is_adapt: false mass_matrix: DiagEuclideanMetric([0.10119426221796951, 0.008 ...]) [ Info: Found initial step size 1.6 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275 Sampling 20%|██████▎ | ETA: 0:00:22 iterations: 2 ratio_divergent_transitions: 0.5 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 1 is_accept: true acceptance_rate: 0.0 log_density: -20.562563494837917 hamiltonian_energy: 28.253292022481727 hamiltonian_energy_error: 0.0 max_hamiltonian_energy_error: 345617.77093851217 tree_depth: 0 numerical_error: true step_size: 3.994038996040486 nom_step_size: 3.994038996040486 is_adapt: false mass_matrix: DiagEuclideanMetric([1.0, 1.0, 1.0, 1.0, 1.0, 1 ...])                 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275                  Sampling 100%|███████████████████████████████| Time: 0:00:05 iterations: 10 ratio_divergent_transitions: 0.9 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 1 is_accept: true acceptance_rate: 0.0 log_density: -20.562563494837917 hamiltonian_energy: 24.94271012751799 hamiltonian_energy_error: 0.0 max_hamiltonian_energy_error: 2.4298249422533512e10 tree_depth: 0 numerical_error: true step_size: 3.994038996040486 nom_step_size: 3.994038996040486 is_adapt: false mass_matrix: DiagEuclideanMetric([1.0, 1.0, 1.0, 1.0, 1.0, 1 ...]) Test Summary: | Pass Total Time MCMCChains extension | 13 13 57.3s Fork Structure (A ← B → C): Test Failed at /home/pkgeval/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:196 Expression: !(is_conditionally_independent(bn, :A, :C, Symbol[])) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] macro expansion @ ~/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:196 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [4] macro expansion @ ~/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:187 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [6] macro expansion @ ~/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:172 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [8] top-level scope @ ~/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:16 Test Summary: | Pass Fail Total Time BayesianNetwork | 79 1 80 6.1s Adding vertices | 14 14 0.1s Adding edges | 1 1 0.1s conditioning and deconditioning | 24 24 1.3s Simple ancestral sampling | 6 6 0.4s Complex ancestral sampling | 11 11 0.6s Bayes Ball | 11 1 12 3.6s Chain Structure (A → B → C) | 2 2 0.5s Fork Structure (A ← B → C) | 1 1 2 3.1s Collider Structure (A → B ← C) | 2 2 0.0s Bayes Ball Algorithm Tests | 3 3 0.0s Complex Structure | 2 2 0.0s Error Handling | 1 1 0.0s Conditional Independence (Single and Multiple Variables) | 12 12 0.0s ERROR: LoadError: Some tests did not pass: 79 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/JuliaBUGS/mYMD7/test/experimental/ProbabilisticGraphicalModels/bayesnet.jl:15 in expression starting at /home/pkgeval/.julia/packages/JuliaBUGS/mYMD7/test/runtests.jl:75 Testing failed after 1036.88s ERROR: LoadError: Package JuliaBUGS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1337.7s: package has test failures