Package evaluation of ImarisWriter on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:06:22.905 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.15s ################################################################################ # Installation # Installing ImarisWriter... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [7685c673] + ImarisWriter v0.2.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [7685c673] + ImarisWriter v0.2.0 [692b3bcd] + JLLWrappers v1.7.0 [21216c6a] + Preferences v1.4.3 ⌅ [0234f1f7] + HDF5_jll v1.12.2+2 [9166e923] + ImarisWriter_jll v0.0.1+0 [5ced341a] + Lz4_jll v1.10.1+0 ⌅ [458c3c95] + OpenSSL_jll v1.1.23+1 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: ImarisWriter Failed to precompile ImarisWriter [7685c673-c356-4b9b-8b22-c9f5550fdd46] to "/home/pkgeval/.julia/compiled/v1.10/ImarisWriter/jl_rB9jtO". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/bedcfe9ab563ee1de22055bd416daedff9aee4e9/lib/libbpImarisWriter96.so" libhdf5-00e8fae8.so.200.0.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined] [4] __init__() @ ImarisWriter_jll ~/.julia/packages/ImarisWriter_jll/lXEgz/src/wrappers/x86_64-linux-gnu-cxx11.jl:11 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1651 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2008 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [14] macro expansion @ ./loading.jl:1860 [inlined] [15] macro expansion @ ./lock.jl:267 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [22] top-level scope @ stdin:4 during initialization of module ImarisWriter_jll in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/src/ImarisWriter.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 15.37s ################################################################################ # Testing # Testing ImarisWriter Status `/tmp/jl_TuDyve/Project.toml` [7685c673] ImarisWriter v0.2.0 [9166e923] ImarisWriter_jll v0.0.1+0 [8f399da3] Libdl [8dfed614] Test Status `/tmp/jl_TuDyve/Manifest.toml` [7685c673] ImarisWriter v0.2.0 [692b3bcd] JLLWrappers v1.7.0 [21216c6a] Preferences v1.4.3 ⌅ [0234f1f7] HDF5_jll v1.12.2+2 [9166e923] ImarisWriter_jll v0.0.1+0 [5ced341a] Lz4_jll v1.10.1+0 ⌅ [458c3c95] OpenSSL_jll v1.1.23+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [56ddb016] Logging [d6f4376e] Markdown [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/bedcfe9ab563ee1de22055bd416daedff9aee4e9/lib/libbpImarisWriter96.so" libhdf5-00e8fae8.so.200.0.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined] [4] __init__() @ ImarisWriter_jll ~/.julia/packages/ImarisWriter_jll/lXEgz/src/wrappers/x86_64-linux-gnu-cxx11.jl:11 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1651 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2008 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [14] macro expansion @ ./loading.jl:1860 [inlined] [15] macro expansion @ ./lock.jl:267 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [22] top-level scope @ stdin:4 during initialization of module ImarisWriter_jll in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/src/ImarisWriter.jl:1 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile ImarisWriter [7685c673-c356-4b9b-8b22-c9f5550fdd46] to "/home/pkgeval/.julia/compiled/v1.10/ImarisWriter/jl_DPenOw". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include(fname::String) @ Base.MainInclude ./client.jl:494 [24] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/test/runtests.jl:1 Testing failed after 10.19s ERROR: LoadError: Package ImarisWriter errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 42.12s: package requires a missing binary dependency