Package evaluation of GpABC on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T16:16:23.937 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.13s ################################################################################ # Installation # Installing GpABC... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [e850a1a4] + GpABC v0.1.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [13072b0f] + AxisAlgorithms v1.1.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.1.0 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.164.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.42 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.8.1 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.4 [e850a1a4] + GpABC v0.1.1 [86223c79] + Graphs v1.12.0 [34004b35] + HypergeometricFunctions v0.3.27 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [5ab0869b] + KernelDensity v0.6.9 [ba0b0d4f] + Krylov v0.9.10 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.0 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [8913a72c] + NonlinearSolve v4.4.0 [be0214bd] + NonlinearSolveBase v1.5.0 [5959db7a] + NonlinearSolveFirstOrder v1.3.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.2.0 [26075421] + NonlinearSolveSpectralMethods v1.1.0 [6fe1bfb0] + OffsetArrays v1.15.0 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 [1dea7af3] + OrdinaryDiffEq v6.91.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] + OrdinaryDiffEqBDF v1.2.0 [bbf590c4] + OrdinaryDiffEqCore v1.18.1 [50262376] + OrdinaryDiffEqDefault v1.3.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.3.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.4.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.7.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.2.0 [521117fe] + OrdinaryDiffEqLinear v1.1.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.2.1 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.2.0 [5b33eab2] + OrdinaryDiffEqPRK v1.1.0 [04162be5] + OrdinaryDiffEqQPRK v1.1.0 [af6ede74] + OrdinaryDiffEqRKN v1.1.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.6.0 [2d112036] + OrdinaryDiffEqSDIRK v1.2.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.2.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.2.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] + OrdinaryDiffEqVerner v1.1.1 [90014a1f] + PDMats v0.11.32 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [995b91a9] + PlotUtils v1.4.3 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.25 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.30.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.0 [19f34311] + SciMLJacobianOperators v0.1.1 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [efcf1570] + Setfield v1.1.1 [727e6d20] + SimpleNonlinearSolve v2.1.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.23.1 [0a514795] + SparseMatrixColorings v0.4.13 [276daf66] + SpecialFunctions v2.5.0 [860ef19b] + StableRNGs v1.0.2 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [7792a7ef] + StrideArraysCore v0.5.7 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.27 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [19fa3120] + VertexSafeGraphs v0.2.0 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 777.93s ################################################################################ # Testing # Testing GpABC Status `/tmp/jl_e8vCy2/Project.toml` ⌅ [5ae59095] Colors v0.12.11 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [f6369f11] ForwardDiff v0.10.38 [e850a1a4] GpABC v0.1.1 [5ab0869b] KernelDensity v0.6.9 [429524aa] Optim v1.11.0 [1dea7af3] OrdinaryDiffEq v6.91.0 [995b91a9] PlotUtils v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [2913bbd2] StatsBase v0.33.21 [37e2e46d] LinearAlgebra [56ddb016] Logging [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_e8vCy2/Manifest.toml` [47edcb42] ADTypes v1.13.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.41 [79e6a3ab] Adapt v4.2.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [13072b0f] AxisAlgorithms v1.1.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.1.0 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.164.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.42 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.8.1 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.4 [e850a1a4] GpABC v0.1.1 [86223c79] Graphs v1.12.0 [34004b35] HypergeometricFunctions v0.3.27 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [5ab0869b] KernelDensity v0.6.9 [ba0b0d4f] Krylov v0.9.10 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.1.2 [8913a72c] NonlinearSolve v4.4.0 [be0214bd] NonlinearSolveBase v1.5.0 [5959db7a] NonlinearSolveFirstOrder v1.3.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.2.0 [26075421] NonlinearSolveSpectralMethods v1.1.0 [6fe1bfb0] OffsetArrays v1.15.0 [429524aa] Optim v1.11.0 [bac558e1] OrderedCollections v1.8.0 [1dea7af3] OrdinaryDiffEq v6.91.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.2.0 [bbf590c4] OrdinaryDiffEqCore v1.18.1 [50262376] OrdinaryDiffEqDefault v1.3.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.4.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.3.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.4.0 [5960d6e9] OrdinaryDiffEqFIRK v1.7.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.2.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.2.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.6.0 [2d112036] OrdinaryDiffEqSDIRK v1.2.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.2.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [90014a1f] PDMats v0.11.32 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [995b91a9] PlotUtils v1.4.3 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.25 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.30.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.75.0 [19f34311] SciMLJacobianOperators v0.1.1 [c0aeaf25] SciMLOperators v0.3.12 [53ae85a6] SciMLStructures v1.6.1 [efcf1570] Setfield v1.1.1 [727e6d20] SimpleNonlinearSolve v2.1.0 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [47a9eef4] SparseDiffTools v2.23.1 [0a514795] SparseMatrixColorings v0.4.13 [276daf66] SpecialFunctions v2.5.0 [860ef19b] StableRNGs v1.0.2 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [7792a7ef] StrideArraysCore v0.5.7 [2efcf032] SymbolicIndexingInterface v0.3.38 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.27 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [19fa3120] VertexSafeGraphs v0.2.0 [efce3f68] WoodburyMatrices v1.0.0 [f5851436] FFTW_jll v3.3.10+3 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `MvNormal(μ::AbstractVector{<:Real}, σ::AbstractVector{<:Real})` is deprecated, use `MvNormal(μ, LinearAlgebra.Diagonal(map(abs2, σ)))` instead. │ caller = ip:0x0 └ @ Core :-1 [ Info: GpABC rejection simulation. ϵ = 0.5. [ Info: GpABC rejection simulation. Accepted 24/1000 particles. [ Info: GpABC rejection simulation. Accepted 46/2000 particles. [ Info: GpABC rejection simulation. Accepted 66/3000 particles. [ Info: GpABC rejection simulation. Accepted 82/4000 particles. [ Info: GpABC rejection simulation. Accepted 102/5000 particles. [ Info: GpABC rejection simulation. Accepted 130/6000 particles. [ Info: GpABC rejection simulation. Accepted 148/7000 particles. [ Info: GpABC rejection simulation. Accepted 169/8000 particles. [ Info: GpABC rejection simulation. Accepted 192/9000 particles. [ Info: GpABC rejection simulation. Accepted 215/10000 particles. ┌ Warning: Simulation reached maximum iterations 10000 before finding 1000 particles - will return 215 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:92 [ Info: GpABC rejection emulation. ϵ = 1.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC rejection simulation. ϵ = 3.0. [ Info: GpABC rejection simulation. Accepted 994/1000 particles. [ Info: GpABC rejection emulation. ϵ = 3.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC rejection simulation. ϵ = 3.0. [ Info: GpABC rejection simulation. Accepted 1000/1000 particles. [ Info: GpABC rejection emulation. ϵ = 3.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 164 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 138 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 148 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 142 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 99 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 ┌ Warning: Emulation reached maximum 3 iterations before finding 1000 particles - will return 147 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:170 [ Info: GpABC rejection simulation. ϵ = 3.0. [ Info: GpABC rejection simulation. Accepted 337/1000 particles. [ Info: GpABC rejection simulation. Accepted 689/2000 particles. [ Info: GpABC SMC simulation ϵ = 2.0 [ Info: GpABC SMC simulation accepted 556/1000 particles. [ Info: GpABC SMC simulation ϵ = 1.0 [ Info: GpABC SMC simulation accepted 381/1000 particles. [ Info: GpABC SMC simulation accepted 758/2000 particles. [ Info: GpABC rejection emulation. ϵ = 3.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 2.0. [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 1.0. [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection simulation. ϵ = 3.0. [ Info: GpABC rejection simulation. Accepted 995/1000 particles. [ Info: GpABC SMC simulation ϵ = 2.0 [ Info: GpABC SMC simulation accepted 782/1000 particles. [ Info: GpABC SMC simulation ϵ = 1.0 [ Info: GpABC SMC simulation accepted 220/1000 particles. [ Info: GpABC SMC simulation accepted 450/2000 particles. [ Info: GpABC SMC simulation accepted 670/3000 particles. [ Info: GpABC SMC simulation accepted 905/4000 particles. [ Info: GpABC rejection emulation. ϵ = 3.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 2.0. [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 1.0. [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC rejection emulation. ϵ = 9.0. [ Info: GpABC rejection emulation. Accepted 1000/10000 particles (1 batches of size 10000). [ Info: GpABC SMC emulation ϵ = 6.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 6.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC SMC emulation ϵ = 3.0. [ Info: GpABC Emulator retraining. Accepted 10 new training points below threshold 3.0 after 10 simulations [ Info: GpABC SMC emulation accepted 1000/10000 particles. [ Info: GpABC model selection simulation Population 1 - ABC Rejection ϵ = 20.0 ┌ Info: GpABC model selection simulation │ Completed 985 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 115 Model 2: 85 Model 3: 0 [ Info: GpABC model selection simulation Population 2 - ABC SMC ϵ = 15.0 ┌ Info: GpABC model selection simulation │ Completed 913 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 51 Model 2: 149 Model 3: 0 [ Info: GpABC model selection simulation Population 3 - ABC SMC ϵ = 10.0 ┌ Info: GpABC model selection simulation │ Completed 5599 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 119 Model 2: 81 Model 3: 0 [ Info: GpABC model selection emulation Population 1 - ABC Rejection ϵ = 20.0 ┌ Info: GpABC model selection emulation │ Completed 33 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 93 Model 2: 107 Model 3: 0 [ Info: GpABC model selection emulation Population 2 - ABC SMC ϵ = 15.0 ┌ Info: GpABC model selection emulation │ Completed 37 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 43 Model 2: 157 Model 3: 0 [ Info: GpABC model selection emulation Population 3 - ABC SMC ϵ = 10.0 ┌ Info: GpABC model selection emulation │ Completed 34 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 46 Model 2: 154 Model 3: 0 [ Info: GpABC model selection emulation Population 1 - ABC Rejection ϵ = 20.0 ┌ Info: GpABC model selection emulation │ Completed 23 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 109 Model 2: 91 Model 3: 0 [ Info: GpABC model selection emulation Population 2 - ABC SMC ϵ = 15.0 [ Info: GpABC Emulator retraining. Iteration 1: 12 design points with distance below 15.0 [ Info: GpABC Emulator retraining. Iteration 2: 15 design points with distance below 15.0 [ Info: GpABC Emulator retraining. Iteration 3: 14 design points with distance below 15.0 [ Info: GpABC Emulator retraining. Iteration 4: 12 design points with distance below 15.0 [ Info: GpABC Emulator retraining. Iteration 1: 61 design points with distance below 15.0 ┌ Info: GpABC model selection emulation │ Completed 64 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 47 Model 2: 153 Model 3: 0 [ Info: GpABC model selection emulation Population 3 - ABC SMC ϵ = 10.0 [ Info: GpABC Emulator retraining. Iteration 1: 3 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 2: 10 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 3: 6 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 4: 6 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 5: 10 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 6: 4 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 7: 8 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 8: 7 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 1: 32 design points with distance below 10.0 [ Info: GpABC Emulator retraining. Iteration 2: 27 design points with distance below 10.0 ┌ Info: GpABC model selection emulation │ Completed 81 iterations, accepting 200 particles in total. │ Number of accepted parameters by model: └ Model 1: 20 Model 2: 180 Model 3: 0 [ Info: GpABC model selection simulation Population 1 - ABC Rejection ϵ = 0.2 ┌ Warning: Simulated model selection reached maximum number of iterations (10000) on the first population - consider trying more iterations. └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/model_selection.jl:110 ┌ Info: GpABC model selection simulation │ Completed 10000 iterations, accepting 0 particles in total. │ Number of accepted parameters by model: └ Model 1: 0 Model 2: 0 Model 3: 0 ┌ Warning: No particles were accepted in population 1 with threshold 0.2 - terminating model selection algorithm └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/model_selection.jl:14 [ Info: GpABC model selection emulation Population 1 - ABC Rejection ϵ = 0.2 ┌ Warning: Emulated model selection reached maximum number of iterations (1000) without accepting 200 particles on the first population - consider trying more iterations. └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/model_selection.jl:209 ┌ Info: GpABC model selection emulation │ Completed 1000 iterations, accepting 0 particles in total. │ Number of accepted parameters by model: └ Model 1: 0 Model 2: 0 Model 3: 0 ┌ Warning: No particles were accepted in population 1 with threshold 0.2 - terminating model selection algorithm └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/abc/model_selection.jl:14 ┌ Warning: `Base.getindex(A::AbstractDiffEqArray, i::Int)` is deprecated, use `Base.getindex(A, :, i)` instead. │ caller = compute_LNA(input::LNAInput, x0::Tuple{Vector{Float64}, Matrix{Float64}}, Tspan::Tuple{Float64, Float64}, saveat::Float64, solver::RK4{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at lna.jl:92 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/util/lna.jl:92 ┌ Warning: `Base.getindex(A::AbstractDiffEqArray, i::Int)` is deprecated, use `Base.getindex(A, :, i)` instead. │ caller = compute_LNA(input::LNAInput, x0::Tuple{Vector{Float64}, Matrix{Float64}}, Tspan::Tuple{Float64, Float64}, saveat::Float64, solver::RK4{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at lna.jl:93 └ @ GpABC ~/.julia/packages/GpABC/o0EN1/src/util/lna.jl:93 [ Info: GpABC rejection simulation. ϵ = 4.0. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 258 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE18getSymbolValueImplENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object10ObjectFile14getSymbolValueENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolAddressENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) getAddress at /source/usr/include/llvm/Object/ObjectFile.h:404 [inlined] get_function_name_and_base at /source/src/debuginfo.cpp:736 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1132 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1164 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1238 ijl_lookup_code_address at /source/src/stackwalk.c:589 lookup at ./stacktraces.jl:108 firstcaller at ./deprecated.jl:157 [inlined] firstcaller at ./deprecated.jl:152 [inlined] macro expansion at ./deprecated.jl:132 [inlined] macro expansion at ./logging.jl:388 [inlined] #depwarn#1052 at ./deprecated.jl:127 depwarn at ./deprecated.jl:121 [inlined] getindex at ./deprecated.jl:104 unknown function (ip: 0x75dc7ed01aac) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #compute_LNA#87 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/lna.jl:92 compute_LNA at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/lna.jl:55 [inlined] #get_LNA_trajectories#95 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/lna.jl:146 [inlined] get_LNA_trajectories at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/lna.jl:139 [inlined] get_LNA_trajectories at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/lna.jl:139 [inlined] simulator_function at /home/pkgeval/.julia/packages/GpABC/o0EN1/test/lna-test.jl:50 unknown function (ip: 0x75dc7ed04145) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 simulate_distance at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/util/emulation_helpers.jl:7 unknown function (ip: 0x75dc7f6962a9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #ABCrejection#23 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:63 ABCrejection at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/rejection.jl:41 [inlined] #initialiseABCSMC#26 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/smc.jl:120 initialiseABCSMC at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/smc.jl:113 [inlined] #ABCSMC#31 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/smc.jl:357 ABCSMC at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/smc.jl:351 [inlined] #SimulatedABCSMC#68 at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/simulation.jl:128 SimulatedABCSMC at /home/pkgeval/.julia/packages/GpABC/o0EN1/src/abc/simulation.jl:105 unknown function (ip: 0x75dc7f6cac47) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:489 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x75dc9e67f125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x75dc9e67f125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x75dc9f52d249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#645 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74890.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x7aa1a1bd9390) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x7aa1a1bd1c45) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x7aa1a1bd1730) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x7aa1a1bd0ff0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x7aa1a1bcd6e9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7aa1a29ca249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007aa195400010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [258] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/GpABC/o0EN1/test/lna-test.jl:3 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#645 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 #1056 at ./Base.jl:608 jfptr_YY.1056_85200.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 13217042 (Pool: 13184537; Big: 32505); GC: 17 PkgEval terminated after 2722.67s: test duration exceeded the time limit