Package evaluation of EcoBase on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T04:39:43.294 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.22s ################################################################################ # Installation # Installing EcoBase... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [a58aae7d] + EcoBase v0.1.7 Updating `~/.julia/environments/v1.10/Manifest.toml` [a58aae7d] + EcoBase v0.1.7 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 [ade2ca70] + Dates [de0858da] + Printf [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode Installation completed after 4.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 130.7s ################################################################################ # Testing # Testing EcoBase Status `/tmp/jl_50hIHa/Project.toml` [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.3.1 [98e50ef6] JuliaFormatter v1.0.62 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.4 [348f2d5d] SpatialEcology v0.9.16 [56ddb016] Logging [44cfe95a] Pkg v1.10.0 [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_50hIHa/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.9 [00ebfdb7] CSTParser v3.4.3 ⌅ [8be319e6] Chain v0.5.0 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.8.15 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [1313f7d8] DataFramesMeta v0.14.1 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.3 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [d7ba0133] Git v1.3.1 [c27321d9] Glob v1.3.1 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [58378933] ResearchSoftwareMetadata v0.1.4 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [348f2d5d] SpatialEcology v0.9.16 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.1 [ddb6d928] YAML v0.4.12 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.47.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Potentially missing tests: - DataTypes.jl - EcoBase.jl - PlotRecipes.jl [ Info: Running tests for files: = Interface.jl [ Info: Running tests... * Testing Interface.jl ... Test Summary: | Pass Total Time EcoBase.jl | 23 23 27.9s [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/bin:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/bin:/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/lib:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_50hIHa", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:449 [3] read @ ./process.jl:458 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:973 [5] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [7] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [8] include(fname::String) @ Base.MainInclude ./client.jl:494 [9] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1669 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [13] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [14] include(fname::String) @ Base.MainInclude ./client.jl:494 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:385 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:557 * Verifying ResearchSoftwareMetadata.jl ... ┌ Info: Ignoring an error that occurred during the precompilation workload │ exception = │ HTTP.ConnectError for url = `https://localhost:57813`: TimeoutException: try_with_timeout timed out after 30.0 seconds │ Stacktrace: │ [1] (::HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/ConnectionRequest.jl:88 │ [2] connections │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ [3] (::Base.var"#96#98"{Base.var"#96#97#99"{ExponentialBackOff, HTTP.RetryRequest.var"#2#5"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ @ Base ./error.jl:296 │ [4] (::HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RetryRequest.jl:75 │ [5] manageretries │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RetryRequest.jl:30 [inlined] │ [6] (::HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/CookieRequest.jl:42 │ [7] managecookies │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/CookieRequest.jl:19 [inlined] │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/HeadersRequest.jl:71 │ [9] defaultheaders │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/HeadersRequest.jl:14 [inlined] │ [10] (::HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RedirectRequest.jl:25 │ [11] redirects │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RedirectRequest.jl:14 [inlined] │ [12] (::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/MessageRequest.jl:35 │ [13] makerequest │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/MessageRequest.jl:24 [inlined] │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:457 │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:455 │ [16] #request#20 │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:315 [inlined] │ [17] request (repeats 2 times) │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:313 [inlined] │ [18] get │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:518 [inlined] │ [19] macro expansion │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:36 [inlined] │ [20] macro expansion │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] │ [21] (::HTTP.var"#51#54"{String})() │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:35 │ [22] withenv(::HTTP.var"#51#54"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ @ Base ./env.jl:257 │ [23] macro expansion │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:34 [inlined] │ [24] macro expansion │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] │ [25] top-level scope │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:4 │ [26] include(mod::Module, _path::String) │ @ Base ./Base.jl:495 │ [27] include │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:1 [inlined] │ [28] top-level scope │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:636 │ [29] include │ @ ./Base.jl:495 [inlined] │ [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) │ @ Base ./loading.jl:2292 │ [31] top-level scope │ @ stdin:4 │ [32] eval │ @ ./boot.jl:385 [inlined] │ [33] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2146 │ [34] include_string │ @ ./loading.jl:2156 [inlined] │ [35] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:321 │ [36] _start() └ @ Base ./client.jl:557 [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 87] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/bin:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/bin:/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/96bc7b9ddb319d1a051535c85184aa2bf42dbd8b/lib:/home/pkgeval/.julia/artifacts/8be4b2d49ed77db4f9607e5f8a7b09cc105be2ee/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_50hIHa", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/8a0f840ec3a4b7913b278fad357755c65b097456/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "JULIA_PKG_PRECOMPILE_AUTO=0", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:449 [3] read @ ./process.jl:458 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:973 [5] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [7] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [8] include(fname::String) @ Base.MainInclude ./client.jl:494 [9] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1669 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [13] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [14] include(fname::String) @ Base.MainInclude ./client.jl:494 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:385 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:557 Test Summary: | Error Total Time test set | 2 2 3m32.6s c = JuliaFormatter | 1 1 51.6s JuliaFormatter | 1 1 3.2s c = ResearchSoftwareMetadata | 1 1 2m41.0s RSMD | 1 1 0.3s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:91 Testing failed after 122.23s ERROR: LoadError: Package EcoBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 401.05s: package tests unexpectedly errored