Package evaluation of EMIRT on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T07:14:51.526


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.22s


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# Installation
#

Installing EMIRT...
   Resolving package versions...
   Installed HDF5 ─ v0.13.7
    Updating `~/.julia/environments/v1.10/Project.toml`
  [8acf8dda] + EMIRT v0.7.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [a74b3585] + Blosc v0.7.3
⌅ [3da002f7] + ColorTypes v0.7.5
⌅ [5ae59095] + Colors v0.9.5
  [8acf8dda] + EMIRT v0.7.0
  [5789e2e9] + FileIO v1.16.6
⌅ [53c48c17] + FixedPointNumbers v0.5.3
⌅ [f67ccb44] + HDF5 v0.13.7
  [692b3bcd] + JLLWrappers v1.7.0
  [21216c6a] + Preferences v1.4.3
⌅ [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v1.3.0
  [0b7ba130] + Blosc_jll v1.21.6+2
⌅ [0234f1f7] + HDF5_jll v1.10.5+7
  [5ced341a] + Lz4_jll v1.10.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0b812e7872e2199a5a04944f486b4048944f1ed8/build.log`

Installation completed after 9.28s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 28.29s


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# Testing
#

     Testing EMIRT
      Status `/tmp/jl_kezC1L/Project.toml`
⌅ [5ae59095] Colors v0.9.5
  [8acf8dda] EMIRT v0.7.0
  [5789e2e9] FileIO v1.16.6
⌅ [53c48c17] FixedPointNumbers v0.5.3
⌅ [f67ccb44] HDF5 v0.13.7
  [8ba89e20] Distributed
  [8dfed614] Test
      Status `/tmp/jl_kezC1L/Manifest.toml`
  [a74b3585] Blosc v0.7.3
⌅ [3da002f7] ColorTypes v0.7.5
⌅ [5ae59095] Colors v0.9.5
  [8acf8dda] EMIRT v0.7.0
  [5789e2e9] FileIO v1.16.6
⌅ [53c48c17] FixedPointNumbers v0.5.3
⌅ [f67ccb44] HDF5 v0.13.7
  [692b3bcd] JLLWrappers v1.7.0
  [21216c6a] Preferences v1.4.3
⌅ [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.3.0
  [0b7ba130] Blosc_jll v1.21.6+2
⌅ [0234f1f7] HDF5_jll v1.10.5+7
  [5ced341a] Lz4_jll v1.10.1+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [83775a58] Zlib_jll v1.2.13+1
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary: | Pass  Total   Time
test IO       |    6      6  17.2s
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/aff.h5 ......done :)
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/lbl.h5 ......done :)
judec = Dict{Symbol, Float32}(:VIFSs => 0.65209204, :ri => 0.9090551, :VIm => 0.013707907, :VIFS => 0.78002024, :rem => 0.00040634486, :VI => 0.2534153, :res => 0.09053859, :rfm => 0.99934644, :rf => 0.9318045, :VIS => -0.2534153, :VIFSm => 0.9703931, :re => 0.09094494, :rfs => 0.87281424, :ris => 0.2877325, :VIs => 0.23970748, :rim => 0.6213226)
  0.005530 seconds (25.61 k allocations: 409.312 KiB)
ecd = Dict{Symbol, Float32}(:VIFSs => 1.0000002, :ri => 1.0, :VIm => 0.0, :VIFS => 1.0000002, :rem => 0.0, :VI => -1.7881393f-7, :res => 0.0, :rfm => 1.0, :rf => 1.0, :VIS => 1.7881393f-7, :VIFSm => 1.0000002, :re => 0.0, :rfs => 1.0, :ris => 0.28813884, :VIs => 0.0, :rim => 0.71186113)
  0.326397 seconds (1.06 M allocations: 22.343 MiB)
ecd = Dict{Symbol, Float32}(:VIFSs => 0.045672014, :ri => 0.28817847, :VIm => 0.0, :VIFS => 0.087353654, :rem => 0.0, :VI => 9.672696, :res => 0.7118215, :rfm => 1.0, :rf => 0.00011138609, :VIS => -9.672696, :VIFSm => 0.99981076, :re => 0.7118215, :rfs => 5.569615f-5, :ris => 0.28813884, :VIs => 9.672764, :rim => 3.9647926f-5)
Test Summary: | Pass  Total  Time
test evaluate |    2      2  6.8s
test segmentation downsampling
create random segmentation for tests
test creating fake mst ...
test relabel_seg ....
  1.282411 seconds (79.88 k allocations: 135.396 MiB, 2.76% gc time, 45.29% compilation time)
test segid1N! ...
test modified serial version ...
  5.403361 seconds (28.09 k allocations: 559.849 MiB, 5.55% gc time, 3.08% compilation time)
test modified serial version ...
  5.026636 seconds (43 allocations: 558.002 MiB, 2.41% gc time)
test mask singletons ...
test removing singletons by masking ...
  1.287964 seconds (17.07 M allocations: 327.168 MiB, 10.99% compilation time)
  1.505619 seconds (17.04 M allocations: 325.229 MiB, 28.92% gc time, 1.92% compilation time)
Test Summary:      | Pass  Total   Time
test segmentations |    2      2  18.4s
transform affinitymap to edge list...
  0.144985 seconds (2 allocations: 8.766 MiB)
  0.169076 seconds (27 allocations: 21.939 MiB)
segment affinity map using connectivity analysis ...
  0.032435 seconds (20 allocations: 6.032 MiB)
transform to uniform distribution ...
map to uniform distribution...get the permutation by sorting......  0.187072 seconds (4 allocations: 9.000 MiB)
done :)
done!
  0.216217 seconds (41 allocations: 30.002 MiB)
exchange x and z axis of affinity map...
exchange x and z of affinity map
  0.006629 seconds (16 allocations: 4.001 MiB)
Test Summary:    |Time
test affinitymap | None  0.4s
     Testing EMIRT tests passed 

Testing completed after 50.72s

PkgEval succeeded after 134.01s