Package evaluation of DANDIArchive on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T06:52:46.977 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 3.39s ################################################################################ # Installation # Installing DANDIArchive... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [992eb4ea] + CondaPkg v0.2.25 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.1 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [ae029012] + Requires v1.3.0 [6c6a2e73] + Scratch v1.2.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Installation completed after 3.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 40.88s ################################################################################ # Testing # Testing DANDIArchive Status `/tmp/jl_sB26QJ/Project.toml` [47d7f1a7] DANDIArchive v0.51.0 [f43a241f] Downloads v1.6.0 [8dfed614] Test Status `/tmp/jl_sB26QJ/Manifest.toml` [992eb4ea] CondaPkg v0.2.25 [47d7f1a7] DANDIArchive v0.51.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.1 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.0 [6c6a2e73] Scratch v1.2.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/CondaPkg.toml CondaPkg Resolving changes + dandi + h5py + libstdcxx-ng + pynwb + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_sB26QJ/.CondaPkg ✔ Created /tmp/jl_sB26QJ/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_sB26QJ/.CondaPkg/pixi.toml │ [dependencies] │ dandi = "==0.51" │ libstdcxx-ng = ">=3.4,<13.0" │ h5py = "*" │ pynwb = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "disabled" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_sB26QJ/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: InitError: Python: ImportError: cannot import name 'inspect_nwb' from 'nwbinspector' (/tmp/jl_sB26QJ/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/__init__.py) Python stacktrace: [1] @ /tmp/jl_sB26QJ/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/bases.py:22 [2] @ /tmp/jl_sB26QJ/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/_private.py:17 [3] @ /tmp/jl_sB26QJ/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/__init__.py:23 [4] @ /tmp/jl_sB26QJ/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/download.py:52 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:92 [2] errcheck(val::Ptr{PythonCall.C.PyObject}) @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:10 [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/builtins.jl:1561 [4] top-level scope @ none:1 [5] eval @ ./boot.jl:385 [inlined] [6] eval @ ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:1 [inlined] [7] |> @ ./operators.jl:917 [inlined] [8] _broadcast_getindex_evalf @ ./broadcast.jl:709 [inlined] [9] _broadcast_getindex @ ./broadcast.jl:682 [inlined] [10] getindex @ ./broadcast.jl:636 [inlined] [11] copyto_nonleaf!(dest::Vector{PythonCall.Core.Py}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(|>), Tuple{Base.Broadcast.Extruded{Vector{Expr}, Tuple{Bool}, Tuple{Int64}}, Base.RefValue{typeof(DANDIArchive.eval)}}}, iter::Base.OneTo{Int64}, state::Int64, count::Int64) @ Base.Broadcast ./broadcast.jl:1098 [12] copy @ ./broadcast.jl:950 [inlined] [13] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(|>), Tuple{Vector{Expr}, Base.RefValue{typeof(DANDIArchive.eval)}}}) @ Base.Broadcast ./broadcast.jl:903 [14] __init__() @ DANDIArchive ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:14 [15] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [16] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [17] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [18] _tryrequire_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing) @ Base ./loading.jl:1601 [19] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2060 [20] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [21] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [22] invoke_in_world @ ./essentials.jl:923 [inlined] [23] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [24] macro expansion @ ./loading.jl:1860 [inlined] [25] macro expansion @ ./lock.jl:267 [inlined] [26] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [27] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [28] invoke_in_world @ ./essentials.jl:923 [inlined] [29] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [30] include(fname::String) @ Base.MainInclude ./client.jl:494 [31] top-level scope @ none:6 during initialization of module DANDIArchive in expression starting at /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 Testing failed after 49.02s ERROR: LoadError: Package DANDIArchive errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 147.39s: package tests unexpectedly errored