Package evaluation of CrystallographyCore on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T05:23:25.576 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.05s ################################################################################ # Installation # Installing CrystallographyCore... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [80545937] + CrystallographyCore v0.6.3 Updating `~/.julia/environments/v1.10/Manifest.toml` [34da2185] + Compat v4.16.0 [80545937] + CrystallographyCore v0.6.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [6ec83bb0] + StructEquality v2.1.0 [56f22d72] + Artifacts [ade2ca70] + Dates [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 7.07s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: AtomsBaseExt Failed to precompile AtomsBaseExt [2bd5ba6d-4a84-5d39-b657-dfb6c88cea5f] to "/home/pkgeval/.julia/compiled/v1.10/AtomsBaseExt/jl_Zkb7GH". ERROR: LoadError: UndefVarError: `bounding_box` not defined Stacktrace: [1] include @ ./Base.jl:495 [inlined] [2] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [3] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/ext/AtomsBaseExt.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 75.16s ################################################################################ # Testing # Testing CrystallographyCore Status `/tmp/jl_s1ojff/Project.toml` [a963bdd2] AtomsBase v0.5.1 [80545937] CrystallographyCore v0.6.3 [90137ffa] StaticArrays v1.9.12 [6ec83bb0] StructEquality v2.1.0 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 ⌅ [c14bd059] UnitfulLinearAlgebra v0.3.7 [37e2e46d] LinearAlgebra [8dfed614] Test Status `/tmp/jl_s1ojff/Manifest.toml` [79e6a3ab] Adapt v4.2.0 [4fba245c] ArrayInterface v7.18.0 [a963bdd2] AtomsBase v0.5.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [80545937] CrystallographyCore v0.6.3 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [0703355e] DimensionalData v0.27.9 [411431e0] Extents v0.1.5 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.10 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [bac558e1] OrderedCollections v1.8.0 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [6ec83bb0] StructEquality v2.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 ⌅ [c14bd059] UnitfulLinearAlgebra v0.3.7 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [de0858da] Printf [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.23+4 [bea87d4a] SuiteSparse_jll v7.2.1+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: UndefVarError: `bounding_box` not defined Stacktrace: [1] include @ ./Base.jl:495 [inlined] [2] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [3] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/ext/AtomsBaseExt.jl:1 in expression starting at stdin:4 ┌ Error: Error during loading of extension AtomsBaseExt of CrystallographyCore, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ Failed to precompile AtomsBaseExt [2bd5ba6d-4a84-5d39-b657-dfb6c88cea5f] to "/home/pkgeval/.julia/compiled/v1.10/AtomsBaseExt/jl_OpjG2O". │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:35 │ [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) │ @ Base ./loading.jl:2539 │ [3] compilecache │ @ ./loading.jl:2411 [inlined] │ [4] (::Base.var"#969#970"{Base.PkgId})() │ @ Base ./loading.jl:2044 │ [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) │ @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 │ [6] #mkpidlock#6 │ @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] │ [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) │ @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 │ [8] #invokelatest#2 │ @ ./essentials.jl:894 [inlined] │ [9] invokelatest │ @ ./essentials.jl:889 [inlined] │ [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) │ @ Base ./loading.jl:3054 │ [11] maybe_cachefile_lock │ @ ./loading.jl:3051 [inlined] │ [12] _require(pkg::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:2040 │ [13] __require_prelocked(uuidkey::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:1882 │ [14] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [15] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [16] _require_prelocked │ @ ./loading.jl:1873 [inlined] │ [17] _require_prelocked │ @ ./loading.jl:1872 [inlined] │ [18] run_extension_callbacks(extid::Base.ExtensionId) │ @ Base ./loading.jl:1365 │ [19] run_extension_callbacks(pkgid::Base.PkgId) │ @ Base ./loading.jl:1400 │ [20] run_package_callbacks(modkey::Base.PkgId) │ @ Base ./loading.jl:1224 │ [21] __require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:1889 │ [22] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [23] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [24] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:1873 │ [25] macro expansion │ @ ./loading.jl:1860 [inlined] │ [26] macro expansion │ @ ./lock.jl:267 [inlined] │ [27] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:1823 │ [28] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [29] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [30] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:1816 │ [31] include(fname::String) │ @ Base.MainInclude ./client.jl:494 │ [32] macro expansion │ @ ~/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:8 [inlined] │ [33] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] │ [34] top-level scope │ @ ~/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:6 │ [35] include(fname::String) │ @ Base.MainInclude ./client.jl:494 │ [36] top-level scope │ @ none:6 │ [37] eval │ @ ./boot.jl:385 [inlined] │ [38] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:296 │ [39] _start() │ @ Base ./client.jl:557 └ @ Base loading.jl:1371 Test example from AtomsBase.jl documentation: Error During Test at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/test/AtomsBase.jl:6 Got exception outside of a @test UndefVarError: `Periodic` not defined Stacktrace: [1] macro expansion @ ~/.julia/packages/CrystallographyCore/ryJor/test/AtomsBase.jl:8 [inlined] [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [3] top-level scope @ ~/.julia/packages/CrystallographyCore/ryJor/test/AtomsBase.jl:7 [4] include(fname::String) @ Base.MainInclude ./client.jl:494 [5] macro expansion @ ~/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:8 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [7] top-level scope @ ~/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:6 [8] include(fname::String) @ Base.MainInclude ./client.jl:494 [9] top-level scope @ none:6 [10] eval @ ./boot.jl:385 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [12] _start() @ Base ./client.jl:557 Test Summary: | Pass Error Total Time CrystallographyCore.jl | 42 1 43 30.5s Test `isbits` | 2 2 1.4s Constructing `Lattice`s | 17 17 9.5s Test broadcasting for lattices | 8 8 2.7s Test broadcasting for reciprocal lattices | 3 3 1.2s Test `eachatom` | 12 12 0.4s Test example from AtomsBase.jl documentation | 1 1 1.1s ERROR: LoadError: Some tests did not pass: 42 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:4 Testing failed after 38.18s ERROR: LoadError: Package CrystallographyCore errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 131.2s: package fails to precompile