Package evaluation of ClimaAtmos on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T15:25:35.154 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.67s ################################################################################ # Installation # Installing ClimaAtmos... Resolving package versions... Installed ClimaAtmos ─ v0.28.5 Updating `~/.julia/environments/v1.10/Project.toml` [b2c96348] + ClimaAtmos v0.28.5 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [86bc3604] + AtmosphericProfilesLibrary v0.1.7 [a9b6321e] + Atomix v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.9.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.4.0 [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [b2c96348] + ClimaAtmos v0.28.5 [3a4d1b5c] + ClimaComms v0.6.6 [d414da3d] + ClimaCore v0.14.26 [1ecacbb8] + ClimaDiagnostics v0.2.12 [5c42b081] + ClimaParams v0.10.19 [595c0a79] + ClimaTimeSteppers v0.8.2 [b3f4f4ca] + ClimaUtilities v0.1.22 [fb6a15b2] + CloseOpenIntervals v0.1.13 [6a9e3e04] + CloudMicrophysics v0.22.8 [3da002f7] + ColorTypes v0.12.0 [5ae59095] + Colors v0.13.0 [861a8166] + Combinatorics v1.0.2 [1fbeeb36] + CommonDataModel v0.3.7 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [7445602f] + CubedSphere v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.164.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.10 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.1 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [19dc6840] + HCubature v1.7.0 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [e98cc03f] + Insolation v0.9.4 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.9.10 ⌅ [0b1a1467] + KrylovKit v0.8.3 [8ac3fa9e] + LRUCache v1.6.1 [10f19ff3] + LayoutPointers v0.1.17 [9dccce8e] + LazyBroadcast v1.0.0 [5c8ed15e] + LinearOperators v2.9.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [c3c07f87] + MultiBroadcastFusion v0.3.3 [85f8d34a] + NCDatasets v0.14.6 ⌅ [5da4648a] + NVTX v0.3.5 [77ba4419] + NaNMath v1.1.2 [0d71be07] + NullBroadcasts v0.1.0 [6fe1bfb0] + OffsetArrays v1.15.0 [bac558e1] + OrderedCollections v1.8.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [1fd47b50] + QuadGK v2.11.2 ⌅ [a01a1ee8] + RRTMGP v0.20.1 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.30.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [7181ea78] + RootSolvers v0.4.3 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.0 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [efcf1570] + Setfield v1.1.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [49b00bb7] + SurfaceFluxes v0.12.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [6aa5eb33] + TaylorSeries v0.18.3 [b718987f] + TextWrap v1.0.2 [b60c26fb] + Thermodynamics v0.12.9 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.27 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [9602ed7d] + Unrolled v0.1.5 [0fe1646c] + UnrolledUtilities v0.1.6 [013be700] + UnsafeAtomics v0.3.0 ⌅ [409d34a3] + VectorInterface v0.4.9 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.12 [0b7ba130] + Blosc_jll v1.21.6+2 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.1.1+0 [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.6+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 1002.45s ################################################################################ # Testing # Testing ClimaAtmos ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_W1ve83/Project.toml` [4c88cf16] Aqua v0.8.11 [c7e460c6] ArgParse v1.2.0 [a14bc488] ArtifactWrappers v0.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.7 ⌅ [13f3f980] CairoMakie v0.11.11 [b2c96348] ClimaAtmos v0.28.5 [3a4d1b5c] ClimaComms v0.6.6 [d414da3d] ClimaCore v0.14.26 [5c42b081] ClimaParams v0.10.19 [e0c89595] ClimaReproducibilityTests v0.1.1 [595c0a79] ClimaTimeSteppers v0.8.2 [b3f4f4ca] ClimaUtilities v0.1.22 [6a9e3e04] CloudMicrophysics v0.22.8 [2b5f629d] DiffEqBase v6.164.1 [31c24e10] Distributions v0.25.117 [442a2c76] FastGaussQuadrature v1.0.2 [e98cc03f] Insolation v0.9.4 [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.10 [033835bb] JLD2 v0.5.11 [682c06a0] JSON v0.21.4 [ba0b0d4f] Krylov v0.9.10 [9dccce8e] LazyBroadcast v1.0.0 [85f8d34a] NCDatasets v0.14.6 ⌅ [5da4648a] NVTX v0.3.5 [0d71be07] NullBroadcasts v0.1.0 [bac558e1] OrderedCollections v1.8.0 [08abe8d2] PrettyTables v2.4.0 ⌅ [a01a1ee8] RRTMGP v0.20.1 [7181ea78] RootSolvers v0.4.3 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.75.0 [90137ffa] StaticArrays v1.9.12 [2913bbd2] StatsBase v0.34.4 [49b00bb7] SurfaceFluxes v0.12.0 [b60c26fb] Thermodynamics v0.12.9 [ddb6d928] YAML v0.4.12 [ade2ca70] Dates [37e2e46d] LinearAlgebra [56ddb016] Logging [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test Status `/tmp/jl_W1ve83/Manifest.toml` [47edcb42] ADTypes v1.13.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.41 [79e6a3ab] Adapt v4.2.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.11 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [a14bc488] ArtifactWrappers v0.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.7 [a9b6321e] Atomix v1.1.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [aae01518] BandedMatrices v1.9.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.4.0 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.11 [d360d2e6] ChainRulesCore v1.25.1 [b2c96348] ClimaAtmos v0.28.5 [3a4d1b5c] ClimaComms v0.6.6 [d414da3d] ClimaCore v0.14.26 [1ecacbb8] ClimaDiagnostics v0.2.12 [5c42b081] ClimaParams v0.10.19 [e0c89595] ClimaReproducibilityTests v0.1.1 [595c0a79] ClimaTimeSteppers v0.8.2 [b3f4f4ca] ClimaUtilities v0.1.22 [fb6a15b2] CloseOpenIntervals v0.1.13 [6a9e3e04] CloudMicrophysics v0.22.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [1fbeeb36] CommonDataModel v0.3.7 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.164.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.10 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [90fa49ef] ErrorfreeArithmetic v0.5.2 ⌃ [429591f6] ExactPredicates v2.2.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.5 [7a1cc6ca] FFTW v1.8.1 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.1 [fa42c844] FastRounding v0.3.1 [5789e2e9] FileIO v1.16.6 [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.23 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [88fa7841] GilbertCurves v0.1.0 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [19dc6840] HCubature v1.7.0 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.27 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [e98cc03f] Insolation v0.9.4 [a98d9a8b] Interpolations v0.15.1 ⌅ [d1acc4aa] IntervalArithmetic v0.20.9 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [b835a17e] JpegTurbo v0.1.5 [63c18a36] KernelAbstractions v0.9.34 [5ab0869b] KernelDensity v0.6.9 [ba0b0d4f] Krylov v0.9.10 ⌅ [0b1a1467] KrylovKit v0.8.3 [8ac3fa9e] LRUCache v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [9dccce8e] LazyBroadcast v1.0.0 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[8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Era global dataset path:`/home/pkgeval/.julia/artifacts/2e591f64c1eda58b0326c88e179a023c17f314fb` [ Info: Era single column dataset path:`/home/pkgeval/.julia/artifacts/3c60094bbd2bf81acf2822eca78bafd58e3f5a60` [ Info: topo dataset path:`/home/pkgeval/.julia/artifacts/9970989c13c2ad015ab5738d42fd9f5b320f1451` [ Info: MiMA convective gravity wave path:`/home/pkgeval/.julia/artifacts/a0dee8def6651bb1a2b394ec22802ba009281dbd` [ Info: GFDL OGWD test data:`/home/pkgeval/.julia/artifacts/c09da6f2776dad389289a1c69c8e0ae77ddf7c96` 452.177665 seconds (16.58 M allocations: 1.457 GiB, 0.56% gc time, 5.82% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Aqua | 13 13 7m32.3s 0.920420 seconds (279.25 k allocations: 23.243 MiB, 91.91% compilation time) Test Summary: | Pass Total Time Dependencies | 1 1 0.9s 2.833508 seconds (1.02 M allocations: 69.981 MiB, 97.94% compilation time) Test Summary: | Pass Total Time Callbacks | 13 13 2.8s ┌ Warning: `FaceFiniteDifferenceSpace(mesh::IntervalMesh)` is deprecated, use `FiniteDifferenceSpace(FiniteDifferenceGrid(ClimaComms.device(), mesh), CellFace())` instead. │ caller = ip:0x0 └ @ Core :-1 [ Info: Using default configuration ┌ Warning: `job_id` is empty and likely not passed to AtmosConfig └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/types.jl:739 ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: z heights │ z_mesh.faces = │ 11-element LinRange{ClimaCore.Geometry.ZPoint{Float32}, Int64}: └ ZPoint(0.0), ZPoint(0.314159), …, ZPoint(2.82743), ZPoint(3.14159) [ Info: No surface orography warp applied 143.916069 seconds (131.48 M allocations: 7.990 GiB, 4.64% gc time, 97.66% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Utilities | 58 58 2m23.9s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml 21.052959 seconds (19.05 M allocations: 772.312 MiB, 1.26% gc time, 89.69% compilation time) Test Summary: | Pass Total Time Parameter tests | 39 39 21.1s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: nothing does nothing if RRTMGP is not used └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:45 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.DryModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`Nothing` │ `radiation_mode`::`Nothing` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.ConstantAlbedo{Float32}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "coupler_compatibility1" └ output_dir = "coupler_compatibility1" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 6.323 s (3324795 allocations: 258.65 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 60.38 s (66763517 allocations: 3.7 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 2.404 s (1257947 allocations: 76.95 MiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 523.57 ms (251066 allocations: 17.69 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#75#76"{…})(short_name::String) at default_diagnostics.jl:85 └ @ ClimaAtmos.Diagnostics ~/.julia/packages/ClimaAtmos/w9pDd/src/diagnostics/default_diagnostics.jl:85 ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#75#76"{…})(short_name::String) at default_diagnostics.jl:85 └ @ ClimaAtmos.Diagnostics ~/.julia/packages/ClimaAtmos/w9pDd/src/diagnostics/default_diagnostics.jl:85 ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#75#76"{…})(short_name::String) at default_diagnostics.jl:85 └ @ ClimaAtmos.Diagnostics ~/.julia/packages/ClimaAtmos/w9pDd/src/diagnostics/default_diagnostics.jl:85 [ Info: Saving accumulated diagnostics to disk with frequency: 1 day [ Info: DictWriter: String[] [ Info: HDF5Writer: String[] [ Info: NetCDFWriter: ["orog_inst", "ts_1d_average", "ta_1d_average", "tas_1d_average", "uas_1d_average", "vas_1d_average", "thetaa_1d_average", "ha_1d_average", "pfull_1d_average", "zg_1d_average", "rhoa_1d_average", "ua_1d_average", "va_1d_average", "wa_1d_average", "hfes_1d_average", "ts_1d_min", "ts_1d_max"] [ Info: initializing diagnostics: 20.14 s (10936455 allocations: 743.04 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 27.942 ms (408 allocations: 29.27 KiB) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 6.265 s (600004 allocations: 31.82 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 [ Info: init integrator: 33.147 s (25867892 allocations: 1.58 GiB) [ Info: Added diagnostics: 45.914 s (26985065 allocations: 1.69 GiB) ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: nothing does nothing if RRTMGP is not used └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:45 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.DryModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`Nothing` │ `radiation_mode`::`Nothing` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.ConstantAlbedo{Float32}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "coupler_compatibility2" └ output_dir = "coupler_compatibility2/output_0000" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 52.142 ms (27 allocations: 695.39 KiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 3.385 s (1265986 allocations: 126.39 MiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 308.647 μs (150 allocations: 10.77 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 209.781 ms (94118 allocations: 6.7 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 [ Info: Saving accumulated diagnostics to disk with frequency: 1 day [ Info: DictWriter: String[] [ Info: HDF5Writer: String[] [ Info: NetCDFWriter: ["orog_inst", "ts_1d_average", "ta_1d_average", "tas_1d_average", "uas_1d_average", "vas_1d_average", "thetaa_1d_average", "ha_1d_average", "pfull_1d_average", "zg_1d_average", "rhoa_1d_average", "ua_1d_average", "va_1d_average", "wa_1d_average", "hfes_1d_average", "ts_1d_min", "ts_1d_max"] [ Info: initializing diagnostics: 637.155 ms (52947 allocations: 9.99 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 6.52 μs (1 allocations: 272 bytes) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 5.173 ms (157 allocations: 4.76 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 [ Info: init integrator: 10.269 s (777289 allocations: 66.69 MiB) [ Info: Added diagnostics: 3.498 s (562633 allocations: 46.37 MiB) ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.EquilMoistModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`ClimaAtmos.FixedCO2{Float64}` │ `radiation_mode`::`ClimaAtmos.RRTMGPInterface.ClearSkyRadiation` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`ClimaAtmos.DiagnosticEDMFX{1, false, Float32}` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.ConstantAlbedo{Float32}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "coupler_compatibility3" └ output_dir = "coupler_compatibility3/output_0000" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 3.908 s (2947928 allocations: 233.87 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 180.866 s (199093169 allocations: 11.03 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 394.996 μs (150 allocations: 10.77 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 454.028 ms (121303 allocations: 8.67 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 [ Info: Saving accumulated diagnostics to disk with frequency: [ Info: DictWriter: Any[] [ Info: HDF5Writer: Any[] [ Info: NetCDFWriter: Any[] [ Info: initializing diagnostics: 716.871 ms (111757 allocations: 13.46 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 39.954 ms (408 allocations: 29.36 KiB) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18, 36] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 16.675 s (7180970 allocations: 472.97 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 [ Info: init integrator: 84.017 s (73982843 allocations: 4.36 GiB) [ Info: Added diagnostics: 3.118 s (102156 allocations: 7.0 MiB) 659.480441 seconds (583.67 M allocations: 32.673 GiB, 4.44% gc time, 98.13% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Coupler Compatibility | 4 4 10m59.5s [ Info: Loading yaml file /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Loading yaml file /tmp/jl_chkVj5 0.828220 seconds (186.26 k allocations: 12.599 MiB, 87.17% compilation time) Test Summary: | Pass Total Time Configuration tests | 4 4 0.8s [ Info: Loading yaml file /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Using default configuration ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: co2_model set to nothing with an RRTMGP model. Resetting to FixedCO2 └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:39 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.DryModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`ClimaAtmos.FixedCO2{Float64}` │ `radiation_mode`::`ClimaAtmos.RRTMGPInterface.ClearSkyRadiation` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.ConstantAlbedo{Float32}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "surface_albedo1" └ output_dir = "surface_albedo1/output_0000" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 4.027 s (2674954 allocations: 215.03 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 17.764 s (21762409 allocations: 1.17 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 320.137 μs (150 allocations: 10.77 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 350.166 ms (112312 allocations: 8.06 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 [ Info: Saving accumulated diagnostics to disk with frequency: [ Info: DictWriter: Any[] [ Info: HDF5Writer: Any[] [ Info: NetCDFWriter: Any[] [ Info: initializing diagnostics: 291.08 ms (65164 allocations: 10.38 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 9.78 μs (1 allocations: 368 bytes) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18, 36] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 105.497 ms (45102 allocations: 7.65 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 [ Info: init integrator: 29.162 s (5602599 allocations: 402.04 MiB) [ Info: Added diagnostics: 2.414 s (68762 allocations: 4.67 MiB) [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: co2_model set to nothing with an RRTMGP model. Resetting to FixedCO2 └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:39 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.DryModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`ClimaAtmos.FixedCO2{Float64}` │ `radiation_mode`::`ClimaAtmos.RRTMGPInterface.ClearSkyRadiation` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.RegressionFunctionAlbedo{Float32, ClimaAtmos.var"#142#144"{Float32}}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "surface_albedo1" └ output_dir = "surface_albedo1/output_0001" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 4.802 s (2674946 allocations: 215.01 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 18.116 s (21515511 allocations: 1.15 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 371.686 μs (150 allocations: 10.77 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 358.638 ms (112320 allocations: 8.06 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 [ Info: Saving accumulated diagnostics to disk with frequency: [ Info: DictWriter: Any[] [ Info: HDF5Writer: Any[] [ Info: NetCDFWriter: Any[] [ Info: initializing diagnostics: 318.658 ms (65163 allocations: 10.37 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 11.1 μs (1 allocations: 368 bytes) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18, 36] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 139.013 ms (45107 allocations: 7.66 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 [ Info: init integrator: 38.001 s (14750657 allocations: 887.21 MiB) [ Info: Added diagnostics: 2.546 s (67056 allocations: 4.56 MiB) [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run (sim.t_end, sim.dt) = (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: co2_model set to nothing with an RRTMGP model. Resetting to FixedCO2 └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:39 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.DryModel` │ `precip_model`::`ClimaAtmos.NoPrecipitation` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`ClimaAtmos.FixedCO2{Float64}` │ `radiation_mode`::`ClimaAtmos.RRTMGPInterface.ClearSkyRadiation` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.CouplerAlbedo` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "surface_albedo1" └ output_dir = "surface_albedo1/output_0002" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 4.452 s (2674952 allocations: 215.09 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 18.583 s (21515510 allocations: 1.15 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 333.927 μs (151 allocations: 11.06 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 356.988 ms (112313 allocations: 8.06 MiB) ┌ Warning: Disabling vertical interpolation, the provided number of points is ignored (using 10) └ @ ClimaDiagnostics.Writers ~/.julia/packages/ClimaDiagnostics/K1oj5/src/netcdf_writer.jl:144 [ Info: Saving accumulated diagnostics to disk with frequency: [ Info: DictWriter: Any[] [ Info: HDF5Writer: Any[] [ Info: NetCDFWriter: Any[] [ Info: initializing diagnostics: 343.223 ms (65170 allocations: 10.38 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 8.2 μs (1 allocations: 368 bytes) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18, 36] [ Info: n_steps_per_cycle (non diagnostics): 9216 [ Info: Define ode function: 140.45 ms (45103 allocations: 7.66 MiB) [ Info: dt_save_to_sol: 86400.0, length(saveat): 11 ┌ Warning: Setting surface albedo to 0.38 at the beginning of the simulation └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/cache/surface_albedo.jl:119 [ Info: init integrator: 30.066 s (4656532 allocations: 336.94 MiB) [ Info: Added diagnostics: 2.549 s (67061 allocations: 4.56 MiB) ┌ Warning: Setting surface albedo to 0.38 at the beginning of the simulation └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/cache/surface_albedo.jl:119 201.330702 seconds (103.68 M allocations: 6.068 GiB, 1.05% gc time, 87.11% compilation time) Test Summary: | Pass Total Time surface albedo tests | 17 17 3m21.3s 19.227058 seconds (6.59 M allocations: 418.375 MiB, 1.73% gc time, 98.58% compilation time) Test Summary: | Pass Total Time Radiation interface tests | 40 40 19.2s 24.475201 seconds (17.00 M allocations: 1.142 GiB, 1.14% gc time, 97.28% compilation time) Test Summary: | Pass Total Time Sponge interface tests | 3 3 24.5s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 497 running 1 of 1 signal (10): User defined signal 1 1.940418 seconds (1.18 M allocations: 85.172 MiB, 98.21% compilation time) Test Summary: | Pass Total Time Sponge interface tests | 1 1 1.9s _ZN4llvm13StringMapImpl15LookupBucketForENS_9StringRefE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm16X86TargetMachine16getSubtargetImplERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN12_GLOBAL__N_124DwarfEHPrepareLegacyPass13runOnFunctionERN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1311 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) emit at /source/src/jitlayers.cpp:724 _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1604 jl_add_to_ee at /source/src/jitlayers.cpp:2015 jl_add_to_ee at /source/src/jitlayers.cpp:1994 _jl_compile_codeinst at /source/src/jitlayers.cpp:276 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 _jl_invoke at /source/src/gf.c:2887 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] macro expansion at ./timing.jl:279 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/test/runtests.jl:24 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/test/runtests.jl:24 [inlined] top-level scope at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 jfptr_eval_25772.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7044418e1125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x704442773249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#645 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 (sim.t_end, sim.dt) = Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000704435200010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:296; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:385; eval ╎ 1 @Base/client.jl:494; include(fname::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Base/boot.jl:385; eval(m::Module, e::Any) ╎ ╎ 1 …s/src/SafeTestsets.jl:30; top-level scope ╎ ╎ 1 …9pDd/test/runtests.jl:25; macro expansion ╎ ╎ 1 @Test/src/Test.jl:1577; macro expansion ╎ ╎ ╎ 1 …pDd/test/runtests.jl:25; macro expansion ╎ ╎ ╎ 1 @Base/timing.jl:279; macro expansion ╎ ╎ ╎ 1 …src/SafeTestsets.jl:28; include ╎ ╎ ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ ╎ ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Modu… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(ident… ╎ ╎ ╎ ╎ 1 @Base/boot.jl:385; eval (864000.0f0, 600.0f0) ┌ Info: Time info: │ dt = "600secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: nothing does nothing if RRTMGP is not used └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:45 [ Info: Using CAM_SE hyperdiffusion. vorticity_hyperdiffusion_coefficient, scalar_hyperdiffusion_coefficient and divergence_damping_factor in the config will be ignored. ┌ Info: numerics │ `energy_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_upwinding`::`Val{:none}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `test_dycore_consistency`::`Nothing` └ `limiter`::`Nothing` jfptr_wait_74890.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x707d6d4de1a0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x707d6d4d6b1d) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x707d6d4d6610) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x707d6d4d5ed0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x707d6d4d25c9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x707d6e2de249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Info: AtmosModel: │ │ `moisture_model`::`ClimaAtmos.EquilMoistModel` │ `precip_model`::`ClimaAtmos.Microphysics0Moment` │ `cloud_model`::`ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}` │ `call_cloud_diagnostics_per_stage`::`Nothing` │ `forcing_type`::`Nothing` │ `subsidence`::`Nothing` │ `ozone`::`ClimaAtmos.IdealizedOzone` │ `co2`::`Nothing` │ `radiation_mode`::`Nothing` │ `ls_adv`::`Nothing` │ `external_forcing`::`Nothing` │ `edmf_coriolis`::`Nothing` │ `tendency_model`::`ClimaAtmos.UseAllTendency` │ `edmfx_model`::`ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}}` │ `turbconv_model`::`Nothing` │ `non_orographic_gravity_wave`::`Nothing` │ `orographic_gravity_wave`::`Nothing` │ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` │ `vert_diff`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` │ `sgs_adv_mode`::`ClimaAtmos.Explicit` │ `viscous_sponge`::`Nothing` │ `smagorinsky_lilly`::`Nothing` │ `rayleigh_sponge`::`Nothing` │ `sfc_temperature`::`ClimaAtmos.ZonallySymmetricSST` │ `insolation`::`ClimaAtmos.IdealizedInsolation` │ `surface_model`::`ClimaAtmos.PrescribedSurfaceTemperature` │ `surface_albedo`::`ClimaAtmos.ConstantAlbedo{Float32}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:none}, Val{:none}, Nothing, Nothing}` ┌ Info: Simulation info │ job_id = "equil_0M" └ output_dir = "equil_0M/output_0000" ┌ Warning: perturb_initstate flag is ignored for single column configuration └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/w9pDd/src/solver/type_getters.jl:178 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000707d60c00010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 1 │ h_elem = 6 │ z_elem = 10 │ ncols = 1 └ ndofs_total = 10 [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [497] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/ClimaAtmos/w9pDd/test/parameterized_tendencies/microphysics/precipitation.jl:14 jl_specializations_get_linfo_ at /source/src/gf.c:221 poptask at ./task.jl:999 #specialize_method#289 at ./compiler/utilities.jl:224 [inlined] specialize_method at ./compiler/utilities.jl:212 [inlined] typeinf_edge at ./compiler/typeinfer.jl:871 wait at ./task.jl:1008 abstract_call_method at ./compiler/abstractinterpretation.jl:633 #wait#645 at ./condition.jl:130 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 abstract_call_known at ./compiler/abstractinterpretation.jl:2101 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 abstract_call at ./compiler/abstractinterpretation.jl:2184 #1056 at ./Base.jl:608 abstract_call at ./compiler/abstractinterpretation.jl:2177 jfptr_YY.1056_85200.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 21293683 (Pool: 21244482; Big: 49201); GC: 21 abstract_call at ./compiler/abstractinterpretation.jl:2369 abstract_eval_call at ./compiler/abstractinterpretation.jl:2385 abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2395 abstract_eval_statement at ./compiler/abstractinterpretation.jl:2639 abstract_eval_basic_statement at ./compiler/abstractinterpretation.jl:2928 typeinf_local at ./compiler/abstractinterpretation.jl:3113 typeinf_nocycle at ./compiler/abstractinterpretation.jl:3201 PkgEval terminated after 2723.08s: test duration exceeded the time limit