Package evaluation of BGEN on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T08:28:56.334


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 4.89s


################################################################################
# Installation
#

Installing BGEN...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [6db4b851] + BGEN v0.2.1
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [6db4b851] + BGEN v0.2.1
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [a10d1c49] + DBInterface v2.6.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.3
  [2447270c] + GeneticVariantBase v0.1.2
  [842dd82b] + InlineStrings v1.4.3
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
  [69de0a69] + Parsers v2.8.1
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [fdea26ae] + SIMD v3.7.1
  [0aa819cd] + SQLite v1.6.1
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [ea10d353] + WeakRefStrings v1.4.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [76ed43ae] + SQLite_jll v3.48.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.1+4
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.45s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 22.17s


################################################################################
# Testing
#

     Testing BGEN
      Status `/tmp/jl_oY3QYm/Project.toml`
  [6db4b851] BGEN v0.2.1
  [2447270c] GeneticVariantBase v0.1.2
  [de0858da] Printf
  [10745b16] Statistics v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_oY3QYm/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [6db4b851] BGEN v0.2.1
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [a10d1c49] DBInterface v2.6.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [ffbed154] DocStringExtensions v0.9.3
  [2447270c] GeneticVariantBase v0.1.2
  [842dd82b] InlineStrings v1.4.3
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.0
  [69de0a69] Parsers v2.8.1
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [fdea26ae] SIMD v3.7.1
  [0aa819cd] SQLite v1.6.1
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [ea10d353] WeakRefStrings v1.4.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [76ed43ae] SQLite_jll v3.48.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [b77e0a4c] InteractiveUtils
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [ca575930] NetworkOptions v1.2.0
  [de0858da] Printf
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.1+4
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
preamble: Error During Test at /home/pkgeval/.julia/packages/BGEN/VXCjF/test/test_basics.jl:47
  Got exception outside of a @test
  startproc must be called before process
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] process(codec::CodecZlib.ZlibDecompressor, input::TranscodingStreams.Memory, output::TranscodingStreams.Memory, error_ref::TranscodingStreams.Error)
      @ CodecZlib ~/.julia/packages/CodecZlib/lEc2s/src/decompression.jl:186
    [3] decompress(io::IOStream, v::BGEN.BgenVariant, h::BGEN.Header; decompressed::Nothing)
      @ BGEN ~/.julia/packages/BGEN/VXCjF/src/genotypes.jl:72
    [4] decompress(io::IOStream, v::BGEN.BgenVariant, h::BGEN.Header)
      @ BGEN ~/.julia/packages/BGEN/VXCjF/src/genotypes.jl:42
    [5] macro expansion
      @ ~/.julia/packages/BGEN/VXCjF/test/test_basics.jl:49 [inlined]
    [6] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
    [7] macro expansion
      @ ~/.julia/packages/BGEN/VXCjF/test/test_basics.jl:48 [inlined]
    [8] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
    [9] top-level scope
      @ ~/.julia/packages/BGEN/VXCjF/test/test_basics.jl:2
   [10] include(fname::String)
      @ Base.MainInclude ./client.jl:494
   [11] top-level scope
      @ ~/.julia/packages/BGEN/VXCjF/test/runtests.jl:12
   [12] include(fname::String)
      @ Base.MainInclude ./client.jl:494
   [13] top-level scope
      @ none:6
   [14] eval
      @ ./boot.jl:385 [inlined]
   [15] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:296
   [16] _start()
      @ Base ./client.jl:557
Test Summary:      | Pass  Error  Total  Time
basics             |   24      1     25  9.2s
  header           |    7             7  1.4s
  samples_separate |    2             2  1.7s
  bgen             |   15            15  2.6s
  preamble         |           1      1  2.4s
ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BGEN/VXCjF/test/test_basics.jl:1
in expression starting at /home/pkgeval/.julia/packages/BGEN/VXCjF/test/runtests.jl:12

Testing failed after 22.92s

ERROR: LoadError: Package BGEN errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 62.92s: package tests unexpectedly errored