Package evaluation of AllenNeuropixels on Julia 1.10.8 (92f03a4775*) started at 2025-02-25T19:00:12.228 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.17s ################################################################################ # Installation # Installing AllenNeuropixels... Resolving package versions... Installed HDF5 ─ v0.16.10 Updating `~/.julia/environments/v1.10/Project.toml` [c7dbd8d7] + AllenNeuropixels v0.2.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.41 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [c7dbd8d7] + AllenNeuropixels v0.2.0 [0b0e28cf] + AllenNeuropixelsBase v0.3.1 [9d22b198] + AllenSDK v0.2.0 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [49dc2e85] + Calculus v0.5.2 [aafaddc9] + CatIndices v0.2.2 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 ⌃ [35d6a980] + ColorSchemes v3.26.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [c3611d14] + ColorVectorSpace v0.9.10 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [992eb4ea] + CondaPkg v0.2.25 [187b0558] + ConstructionBase v1.5.8 [96eb917e] + ContinuousWavelets v1.1.5 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [5732040d] + DelayEmbeddings v2.8.0 [8bb1440f] + DelimitedFiles v1.9.1 [39dd38d3] + Dierckx v0.5.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [0703355e] + DimensionalData v0.27.9 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [e30172f5] + Documenter v1.8.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [411431e0] + Extents v0.1.5 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.16.6 [48062228] + FilePathsBase v0.9.23 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [f7f18e0c] + GLFW v3.4.3 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [d7ba0133] + Git v1.3.1 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.0 ⌅ [f67ccb44] + HDF5 v0.16.10 [cd3eb016] + HTTP v1.10.15 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.27 [09f84164] + HypothesisTests v0.11.3 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 ⌃ [2803e5a7] + ImageAxes v0.6.11 ⌃ [c817782e] + ImageBase v0.1.5 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] + ImageCore v0.9.4 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 ⌃ [6a3955dd] + ImageFiltering v0.7.6 ⌃ [82e4d734] + ImageIO v0.6.8 ⌃ [6218d12a] + ImageMagick v1.2.1 ⌃ [bc367c6b] + ImageMetadata v0.9.9 [787d08f9] + ImageMorphology v0.4.5 [2996bd0c] + ImageQualityIndexes v0.3.7 ⌃ [80713f31] + ImageSegmentation v1.8.1 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.1 ⌃ [916415d5] + Images v0.26.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [1d092043] + IntegralArrays v0.1.6 [85a1e053] + Interfaces v0.3.2 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools 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v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.1+4 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9ffc57b9bb643bf3fce34f3daf9ff506ed2d8b7a/build.log` Installation completed after 13.82s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: RPRMakie Failed to precompile RPRMakie [22d9f318-5e34-4b44-b769-6e3734a732a6] to "/home/pkgeval/.julia/compiled/v1.10/RPRMakie/jl_wXojJa". julia: /source/src/subtype.c:4717: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [569] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/Y3ABD/precompile/shared-precompile.jl:90 unknown function (ip: 0x7c11f8662ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7c11f85fe394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4717 type_morespecific_ at /source/src/subtype.c:4975 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5085 type_morespecific_ at /source/src/subtype.c:5043 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5137 tuple_morespecific at /source/src/subtype.c:4779 [inlined] type_morespecific_ at /source/src/subtype.c:4961 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:227 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:218 unknown function (ip: 0x7c11d6b94c9c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:278 unknown function (ip: 0x7c11d6b93eac) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#65 at /home/pkgeval/.julia/packages/MakieCore/EU17Y/src/recipes.jl:514 poly! at /home/pkgeval/.julia/packages/MakieCore/EU17Y/src/recipes.jl:512 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x7c11d6b87405) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1443 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:317 [inlined] #_block#1442 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:261 [inlined] #_#1440 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:239 unknown function (ip: 0x7c11d6b81ab5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/precompiles.jl:33 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/Makie.jl:1 unknown function (ip: 0x7c11f7794fa5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81302.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7c11f85ff249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 99736878 (Pool: 99662527; Big: 74351); GC: 93 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_K7iX0N". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/RPRMakie/g1jlP/src/RPRMakie.jl:1 in expression starting at stdin:4 GeoMakie Failed to precompile GeoMakie [db073c08-6b98-4ee5-b6a4-5efafb3259c6] to "/home/pkgeval/.julia/compiled/v1.10/GeoMakie/jl_KimiQn". julia: /source/src/subtype.c:4717: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [575] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/Y3ABD/precompile/shared-precompile.jl:90 unknown function (ip: 0x77a528786ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x77a528722394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4717 type_morespecific_ at /source/src/subtype.c:4975 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5085 type_morespecific_ at /source/src/subtype.c:5043 type_morespecific_ at /source/src/subtype.c:5140 type_morespecific_ at /source/src/subtype.c:5137 tuple_morespecific at /source/src/subtype.c:4779 [inlined] type_morespecific_ at /source/src/subtype.c:4961 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:227 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:218 unknown function (ip: 0x77a506b9660c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/interfaces.jl:278 unknown function (ip: 0x77a506b9581c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#65 at /home/pkgeval/.julia/packages/MakieCore/EU17Y/src/recipes.jl:514 poly! at /home/pkgeval/.julia/packages/MakieCore/EU17Y/src/recipes.jl:512 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x77a506b88d75) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1443 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:317 [inlined] #_block#1442 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:261 [inlined] #_#1440 at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/makielayout/blocks.jl:239 unknown function (ip: 0x77a506b83425) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/precompiles.jl:33 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Y3ABD/src/Makie.jl:1 unknown function (ip: 0x77a527895fa5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81302.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_82985.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77a528723249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 100071182 (Pool: 99996642; Big: 74540); GC: 88 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_2tIurw". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GeoMakie/gwovq/src/GeoMakie.jl:1 in expression starting at stdin:4 AllenNeuropixels Failed to precompile AllenNeuropixels [c7dbd8d7-5c13-4dcb-90e2-bff79a096f56] to "/home/pkgeval/.julia/compiled/v1.10/AllenNeuropixels/jl_zjKO6F". CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PyFOOOF/bExoX/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/NWBStream/8csZ3/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Resolving changes + aiohttp + allensdk (pip) + argschema (pip) + fooof + fsspec + h5py + hdmf + libstdcxx-ng + ndx-events (pip) + openssl + pynwb + python + requests + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_I2nm31/.CondaPkg ✔ Created /tmp/jl_I2nm31/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_I2nm31/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=1.1, <1.1.24" │ aiohttp = "*" │ libstdcxx-ng = ">=3.4,<13.0" │ h5py = "*" │ fooof = ">=1.0, <2" │ uv = ">=0.4" │ pynwb = "*" │ fsspec = "*" │ hdmf = ">3.6" │ wheel = "*" │ requests = "*" │ │ [dependencies.python] │ channel = "anaconda" │ version = ">=3.8,<4, >=3.5,<4, >=3.9,<=3.11" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["anaconda", "conda-forge"] │ channel-priority = "disabled" │ description = "automatically generated by CondaPkg.jl" │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.allensdk] │ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" │ │ [pypi-dependencies.argschema] └ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_I2nm31/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_I2nm31/.CondaPkg/pixi.toml`,["PYTHON=", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=/tmp/jl_I2nm31/Project.toml:/home/pkgeval/.julia/environments/v1.10/Project.toml:/opt/julia/share/julia/stdlib/v1.10", "PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:480 [3] run(::Cmd) @ Base ./process.jl:477 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:551 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:545 [6] (::CondaPkg.var"#59#69"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:825 [7] cd(f::CondaPkg.var"#59#69"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:776 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:569 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1651 [17] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2008 [18] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [19] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [20] invoke_in_world @ ./essentials.jl:923 [inlined] [21] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [22] macro expansion @ ./loading.jl:1860 [inlined] [23] macro expansion @ ./lock.jl:267 [inlined] [24] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [25] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [26] invoke_in_world @ ./essentials.jl:923 [inlined] [27] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [28] include @ ./Base.jl:495 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [30] top-level scope @ stdin:4 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenNeuropixels/NVGC2/src/AllenNeuropixels.jl:1 in expression starting at stdin:4 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1101.94s ################################################################################ # Testing # Testing AllenNeuropixels ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_YVjg84/Project.toml` [c7dbd8d7] AllenNeuropixels v0.2.0 [35d6a980] ColorSchemes v3.29.0 ⌅ [5ae59095] Colors v0.12.11 [a93c6f00] DataFrames v1.7.0 [5789e2e9] FileIO v1.16.6 [cf35fbd7] GeoInterface v1.4.1 [61d90e0f] GeoJSON v0.8.2 [db073c08] GeoMakie v0.7.11 ⌅ [5c1252a2] GeometryBasics v0.4.11 [4e3cecfd] ImageShow v0.3.8 ⌅ [7269a6da] MeshIO v0.4.13 [85f8d34a] NCDatasets v0.14.6 ⌃ [22d9f318] RPRMakie v0.7.18 ⌃ [27029320] RadeonProRender v0.3.2 [44cfe95a] Pkg v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_YVjg84/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.41 [79e6a3ab] Adapt v4.2.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [c7dbd8d7] AllenNeuropixels v0.2.0 [0b0e28cf] AllenNeuropixelsBase v0.3.1 [9d22b198] AllenSDK v0.2.0 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.18.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [1fbeeb36] CommonDataModel v0.3.7 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.25 [187b0558] ConstructionBase v1.5.8 [96eb917e] ContinuousWavelets v1.1.5 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [39dd38d3] Dierckx v0.5.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [0703355e] DimensionalData v0.27.9 [3c3547ce] DiskArrays v0.4.10 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.8.1 [4e289a0a] EnumX v1.0.4 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.5 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.16.6 [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.23 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [f7f18e0c] GLFW v3.4.3 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [0edc0954] GeoInterfaceMakie v0.1.9 [0329782f] GeoInterfaceRecipes v1.0.2 [61d90e0f] GeoJSON v0.8.2 [db073c08] GeoMakie v0.7.11 [0ef565a4] Geodesy v1.1.0 ⌅ [5c1252a2] GeometryBasics v0.4.11 [3251bfac] GeometryOps v0.1.15 [05efe853] GeometryOpsCore v0.1.2 ⌃ [d7ba0133] Git v1.3.0 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.12.0 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 ⌅ [f67ccb44] HDF5 v0.16.10 [cd3eb016] HTTP v1.10.15 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.27 [09f84164] HypothesisTests v0.11.3 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [cbc4b850] ImageBinarization v0.3.1 [f332f351] ImageContrastAdjustment v0.3.12 [a09fc81d] ImageCore v0.10.5 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 [6a3955dd] ImageFiltering v0.7.9 [82e4d734] ImageIO v0.6.9 [6218d12a] ImageMagick v1.4.0 [bc367c6b] ImageMetadata v0.9.10 [787d08f9] ImageMorphology v0.4.5 [2996bd0c] ImageQualityIndexes v0.3.7 [80713f31] ImageSegmentation v1.8.4 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.1 [916415d5] Images v0.26.2 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [1d092043] IntegralArrays v0.1.6 [85a1e053] Interfaces v0.3.2 [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.23 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.1 [b835a17e] JpegTurbo v0.1.5 [5ab0869b] KernelDensity v0.6.9 [8ac3fa9e] LRUCache v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [fc60dff9] LombScargle v1.0.3 [bdcacae8] LoopVectorization v0.12.171 [2fda8390] LsqFit v0.15.0 [1914dd2f] MacroTools v0.5.15 ⌅ [ee78f7c6] Makie v0.21.18 ⌅ [20f20a25] MakieCore v0.8.12 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 [0a4f8689] MathTeXEngine v0.6.2 [739be429] MbedTLS v1.1.9 [eff96d63] Measurements v2.12.0 ⌅ [7269a6da] MeshIO v0.4.13 [e6723b4c] Meshing v0.7.0 [626554b9] MetaGraphs v0.8.0 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [e94cdb99] MosaicViews v0.3.4 [6f286f6a] MultivariateStats v0.10.3 [85f8d34a] NCDatasets v0.14.6 [d41bc354] NLSolversBase v7.8.3 [9bb6cfbd] NRRD v0.6.5 [5982c9a4] NWBStream v0.1.0 [77ba4419] NaNMath v1.1.2 [436b0209] NaturalEarth v0.1.0 [b8a86587] NearestNeighbors v0.4.21 [645ca80c] Neighborhood v0.2.4 [f09324ee] Netpbm v1.1.1 [be38d6a3] Normalization v0.7.3 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.15.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers 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[3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PyFOOOF/bExoX/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/NWBStream/8csZ3/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Resolving changes + aiohttp + allensdk (pip) + argschema (pip) + fooof + fsspec + h5py + hdmf + libstdcxx-ng + ndx-events (pip) + openssl + pynwb + python + requests + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_YVjg84/.CondaPkg ✔ Created /tmp/jl_YVjg84/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_YVjg84/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=1.1, <1.1.24" │ aiohttp = "*" │ libstdcxx-ng = ">=3.4,<13.0" │ h5py = "*" │ fooof = ">=1.0, <2" │ uv = ">=0.4" │ pynwb = "*" │ fsspec = "*" │ hdmf = ">3.6" │ wheel = "*" │ requests = "*" │ │ [dependencies.python] │ channel = "anaconda" │ version = ">=3.8,<4, >=3.5,<4, >=3.9,<=3.11" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["anaconda", "conda-forge"] │ channel-priority = "disabled" │ description = "automatically generated by CondaPkg.jl" │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.allensdk] │ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" │ │ [pypi-dependencies.argschema] └ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_YVjg84/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_YVjg84/.CondaPkg/pixi.toml`,["PYTHON=", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=/tmp/jl_YVjg84/Project.toml", "PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:480 [3] run(::Cmd) @ Base ./process.jl:477 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:551 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:545 [6] (::CondaPkg.var"#59#69"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:825 [7] cd(f::CondaPkg.var"#59#69"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:776 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/resolve.jl:569 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/EtMAJ/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1651 [17] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2008 [18] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [19] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [20] invoke_in_world @ ./essentials.jl:923 [inlined] [21] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [22] macro expansion @ ./loading.jl:1860 [inlined] [23] macro expansion @ ./lock.jl:267 [inlined] [24] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [25] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [26] invoke_in_world @ ./essentials.jl:923 [inlined] [27] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [28] include @ ./Base.jl:495 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [30] top-level scope @ stdin:4 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenNeuropixels/NVGC2/src/AllenNeuropixels.jl:1 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile AllenNeuropixels [c7dbd8d7-5c13-4dcb-90e2-bff79a096f56] to "/home/pkgeval/.julia/compiled/v1.10/AllenNeuropixels/jl_aUpth2". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#969#970"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#969#970"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#969#970"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include(fname::String) @ Base.MainInclude ./client.jl:494 [24] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/AllenNeuropixels/NVGC2/test/runtests.jl:1 Testing failed after 31.07s ERROR: LoadError: Package AllenNeuropixels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 1204.77s: the process was aborted