Package evaluation of TrajGWAS on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T08:48:11.777 ################################################################################ # Set-up # Set-up completed after 0.23s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Installed BioGenerics ────────────────────── v0.1.5 Installed HypergeometricFunctions ────────── v0.3.28 Installed StatsFuns ──────────────────────── v1.5.0 Installed CodecXz ────────────────────────── v0.7.4 Installed OffsetArrays ───────────────────── v1.17.0 Installed Accessors ──────────────────────── v0.1.42 Installed Preferences ────────────────────── v1.4.3 Installed MutableArithmetics ─────────────── v1.6.4 Installed PDMats ─────────────────────────── v0.11.34 Installed ProgressMeter ──────────────────── v1.10.4 Installed InlineStrings ──────────────────── v1.4.3 Installed EnumX ──────────────────────────── v1.0.5 Installed DelimitedFiles ─────────────────── v1.9.1 Installed StaticArrays ───────────────────── v1.9.13 Installed Roots ──────────────────────────── v2.2.7 Installed InvertedIndices ────────────────── v1.3.1 Installed OpenBLAS32_jll ─────────────────── v0.3.29+0 Installed Statistics ─────────────────────── v1.11.1 Installed Static ─────────────────────────── v1.2.0 Installed SLEEFPirates ───────────────────── v0.6.43 Installed Missings ───────────────────────── v1.2.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed FiniteDiff ─────────────────────── v2.27.0 Installed IrrationalConstants ────────────── v0.2.4 Installed SIMD ───────────────────────────── v3.7.1 Installed DataFrames ─────────────────────── v1.7.0 Installed JSON ───────────────────────────── v0.21.4 Installed CpuId ──────────────────────────── v0.3.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed NLopt ──────────────────────────── v0.6.5 Installed Hwloc_jll ──────────────────────── v2.12.0+0 Installed MUMPS_seq_jll ──────────────────── v500.700.301+0 Installed ADTypes ────────────────────────── v1.14.0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed SentinelArrays ─────────────────── v1.4.8 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed BenchmarkTools ─────────────────── v1.6.0 Installed SpecialFunctions ───────────────── v2.5.1 Installed MathOptInterface ───────────────── v1.39.0 Installed StaticArraysCore ───────────────── v1.4.3 Installed NaNMath ────────────────────────── v1.1.3 Installed IfElse ─────────────────────────── v0.1.1 Installed WorkerUtilities ────────────────── v1.6.1 Installed ThreadingUtilities ─────────────── v0.5.3 Installed ManualMemory ───────────────────── v0.1.8 Installed TranscodingStreams ─────────────── v0.9.13 Installed NLSolversBase ──────────────────── v7.9.1 Installed MathProgBase ───────────────────── v0.7.8 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Ipopt_jll ──────────────────────── v300.1400.1700+0 Installed DBInterface ────────────────────── v2.6.1 Installed HypothesisTests ────────────────── v0.11.5 Installed StatsModels ────────────────────── v0.7.4 Installed Ratios ─────────────────────────── v0.4.5 Installed WeakRefStrings ─────────────────── v1.4.2 Installed TrajGWAS ───────────────────────── v0.4.6 Installed CommonSubexpressions ───────────── v0.3.1 Installed DataStructures ─────────────────── v0.18.22 Installed BufferedStreams ────────────────── v1.2.2 Installed StatsAPI ───────────────────────── v1.7.0 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Compat ─────────────────────────── v4.16.0 Installed Glob ───────────────────────────── v1.3.1 Installed StaticArrayInterface ───────────── v1.8.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed Automa ─────────────────────────── v0.8.4 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed StructTypes ────────────────────── v1.11.0 Installed StatsBase ──────────────────────── v0.34.4 Installed DiffRules ──────────────────────── v1.15.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed SPRAL_jll ──────────────────────── v2024.5.8+0 Installed TableTraits ────────────────────── v1.0.1 Installed JSON3 ──────────────────────────── v1.14.2 Installed DiffResults ────────────────────── v1.1.0 Installed PositiveFactorizations ─────────── v0.2.4 Installed Parsers ────────────────────────── v2.8.3 Installed Setfield ───────────────────────── v1.1.2 Installed CategoricalArrays ──────────────── v0.10.8 Installed PrettyTables ───────────────────── v2.4.0 Installed PooledArrays ───────────────────── v1.4.3 Installed JLLWrappers ────────────────────── v1.7.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed LoopVectorization ──────────────── v0.12.172 Installed ConstructionBase ───────────────── v1.5.8 Installed OrderedCollections ─────────────── v1.8.0 Installed Combinatorics ──────────────────── v1.0.2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ArrayInterface ─────────────────── v7.18.0 Installed ChainRulesCore ─────────────────── v1.25.1 Installed Reexport ───────────────────────── v1.2.2 Installed LogExpFunctions ────────────────── v0.3.29 Installed LineSearches ───────────────────── v7.3.0 Installed VariantCallFormat ──────────────── v0.5.6 Installed CompositionsBase ───────────────── v0.1.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed AliasTables ────────────────────── v1.1.3 Installed MacroTools ─────────────────────── v0.5.16 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed UnPack ─────────────────────────── v1.0.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed InverseFunctions ───────────────── v0.1.17 Installed CommonSolve ────────────────────── v0.2.4 Installed DocStringExtensions ────────────── v0.9.4 Installed SQLite ─────────────────────────── v1.6.1 Installed VCFTools ───────────────────────── v0.2.10 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed Crayons ────────────────────────── v4.1.1 Installed Adapt ──────────────────────────── v4.3.0 Installed VectorizationBase ──────────────── v0.21.71 Installed Rmath ──────────────────────────── v0.8.0 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed DifferentiationInterface ───────── v0.6.52 Installed CPUSummary ─────────────────────── v0.2.6 Installed DataAPI ────────────────────────── v1.16.0 Installed Ipopt ──────────────────────────── v1.10.2 Installed Tables ─────────────────────────── v1.12.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed BGZFStreams ────────────────────── v0.3.2 Installed PrecompileTools ────────────────── v1.3.2 Installed HostCPUFeatures ────────────────── v0.1.17 Installed LaTeXStrings ───────────────────── v1.4.0 Installed FilePathsBase ──────────────────── v0.9.24 Installed Optim ──────────────────────────── v1.12.0 Installed ForwardDiff ────────────────────── v1.0.1 Installed Interpolations ─────────────────── v0.14.0 Installed FillArrays ─────────────────────── v1.13.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed WiSER ──────────────────────────── v0.2.6 Installed CodecZstd ──────────────────────── v0.8.6 Installed AxisAlgorithms ─────────────────── v1.0.1 Installed ShiftedArrays ──────────────────── v2.0.0 Installed Requires ───────────────────────── v1.3.1 Installed Parameters ─────────────────────── v0.12.3 Installed Distributions ──────────────────── v0.25.119 Installed WoodburyMatrices ───────────────── v0.5.6 Installed StringManipulation ─────────────── v0.4.1 Installed SortingAlgorithms ──────────────── v1.2.1 Installed CSV ────────────────────────────── v0.10.15 Installed SnpArrays ──────────────────────── v0.3.22 Installed BGEN ───────────────────────────── v0.1.17 Installing 14 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact METIS 1.1 MiB Installed artifact ASL 276.3 KiB Installed artifact Bzip2 503.5 KiB Installed artifact SQLite 5.0 MiB Installed artifact Zstd 646.0 KiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact SPRAL 689.5 KiB Installed artifact NLopt 322.7 KiB Installed artifact XZ 1.5 MiB Installed artifact MUMPS_seq 8.9 MiB Installed artifact Ipopt 1.3 MiB Installed artifact Hwloc 3.5 MiB Updating `~/.julia/environments/v1.13/Project.toml` [9514c204] + TrajGWAS v0.4.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 ⌅ [67c07d97] + Automa v0.8.4 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.14.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.10.2 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.39.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.3 [9514c204] + TrajGWAS v0.4.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [2ff19380] + WiSER v0.2.6 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [76ed43ae] + SQLite_jll v3.48.0+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 22.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 2183.3 ms ✓ Combinatorics 772.2 ms ✓ LaTeXStrings 1010.8 ms ✓ PositiveFactorizations 828.2 ms ✓ Glob 674.6 ms ✓ IteratorInterfaceExtensions 988.7 ms ✓ WorkerUtilities 900.5 ms ✓ StatsAPI 1337.0 ms ✓ ADTypes 1627.3 ms ✓ OffsetArrays 712.5 ms ✓ UnPack 1953.0 ms ✓ FillArrays 922.2 ms ✓ InverseFunctions 1015.5 ms ✓ BufferedStreams 1164.9 ms ✓ Statistics 721.7 ms ✓ CommonSolve 4208.2 ms ✓ MacroTools 844.1 ms ✓ ManualMemory 868.5 ms ✓ ShiftedArrays 1278.6 ms ✓ OrderedCollections 1194.6 ms ✓ Requires 698.9 ms ✓ DataValueInterfaces 789.8 ms ✓ EnumX 713.6 ms ✓ Reexport 699.3 ms ✓ SIMDTypes 1121.4 ms ✓ DocStringExtensions 1657.6 ms ✓ InlineStrings 2380.7 ms ✓ IrrationalConstants 880.1 ms ✓ CompositionsBase 813.0 ms ✓ PtrArrays 842.0 ms ✓ DBInterface 1329.6 ms ✓ NaNMath 1117.8 ms ✓ DelimitedFiles 883.1 ms ✓ InvertedIndices 719.3 ms ✓ IfElse 1057.7 ms ✓ ConstructionBase 728.9 ms ✓ CommonWorldInvalidations 820.5 ms ✓ DataAPI 1835.1 ms ✓ Crayons 846.4 ms ✓ StaticArraysCore 1421.6 ms ✓ SuiteSparse 1856.6 ms ✓ ProgressMeter 1479.0 ms ✓ WoodburyMatrices 2158.6 ms ✓ MathProgBase 3959.0 ms ✓ SentinelArrays 1715.3 ms ✓ StructTypes 2137.0 ms ✓ CpuId 1223.4 ms ✓ Preferences 1229.6 ms ✓ Compat 2595.9 ms ✓ TranscodingStreams 11105.9 ms ✓ MutableArithmetics 839.1 ms ✓ TableTraits 2012.5 ms ✓ DifferentiationInterface 1535.6 ms ✓ FillArrays → FillArraysSparseArraysExt 2600.7 ms ✓ InverseFunctions → InverseFunctionsTestExt 1332.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1458.0 ms ✓ Statistics → SparseArraysExt 1070.7 ms ✓ FillArrays → FillArraysStatisticsExt 1785.9 ms ✓ CommonSubexpressions 1809.0 ms ✓ ThreadingUtilities 1042.2 ms ✓ Parameters 801.8 ms ✓ Ratios 1000.5 ms ✓ Adapt 1450.4 ms ✓ LogExpFunctions 921.9 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1081.6 ms ✓ AliasTables 930.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 939.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1119.4 ms ✓ PooledArrays 1079.7 ms ✓ Missings 957.9 ms ✓ DiffResults 1828.4 ms ✓ PDMats 1452.2 ms ✓ AxisAlgorithms 1180.8 ms ✓ JLLWrappers 1002.4 ms ✓ PrecompileTools 972.3 ms ✓ Compat → CompatLinearAlgebraExt 2546.8 ms ✓ Automa 1878.4 ms ✓ BioGenerics 1858.5 ms ✓ CodecZlib 1769.3 ms ✓ Tables 1414.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1383.4 ms ✓ Adapt → AdaptSparseArraysExt 1199.5 ms ✓ ArrayInterface 1149.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1360.8 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3160.8 ms ✓ Setfield 5172.5 ms ✓ Accessors 6709.3 ms ✓ CategoricalArrays 1452.5 ms ✓ FillArrays → FillArraysPDMatsExt 1426.7 ms ✓ Bzip2_jll 1414.6 ms ✓ OpenBLAS32_jll 1459.5 ms ✓ METIS_jll 1435.9 ms ✓ Rmath_jll 1445.3 ms ✓ ASL_jll 1393.7 ms ✓ Hwloc_jll 1394.1 ms ✓ SQLite_jll 1425.5 ms ✓ XZ_jll 1424.8 ms ✓ NLopt_jll 1454.4 ms ✓ Zstd_jll 1415.6 ms ✓ OpenSpecFun_jll 13603.9 ms ✓ StaticArrays 3055.2 ms ✓ StringManipulation 17275.7 ms ✓ SIMD 17615.1 ms ✓ Parsers 5174.8 ms ✓ Static 4258.7 ms ✓ DataStructures 2416.5 ms ✓ FilePathsBase 2723.9 ms ✓ ChainRulesCore 1943.1 ms ✓ BGZFStreams 1358.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 929.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2748.6 ms ✓ Accessors → LinearAlgebraExt 2179.5 ms ✓ Accessors → TestExt 1161.1 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1201.0 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 2131.4 ms ✓ CodecBzip2 1633.2 ms ✓ MUMPS_seq_jll 1826.1 ms ✓ Rmath 1641.7 ms ✓ SPRAL_jll 2124.2 ms ✓ CodecXz 3258.5 ms ✓ CodecZstd 5494.9 ms ✓ SpecialFunctions 1645.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1680.0 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1683.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1667.5 ms ✓ Adapt → AdaptStaticArraysExt 1865.3 ms ✓ Accessors → StaticArraysExt 30873.1 ms ✓ PrettyTables 15692.3 ms ✓ JSON3 4080.0 ms ✓ JSON 1248.5 ms ✓ InlineStrings → ParsersExt 1256.9 ms ✓ BitTwiddlingConvenienceFunctions 2988.7 ms ✓ CPUSummary 9513.7 ms ✓ StaticArrayInterface 2017.0 ms ✓ SortingAlgorithms 3154.5 ms ✓ QuadGK 1293.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3399.1 ms ✓ FilePathsBase → FilePathsBaseTestExt 1518.1 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1056.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 973.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2849.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 870.4 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1294.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 16631.8 ms ✓ VariantCallFormat 1379.6 ms ✓ FiniteDiff 6827.4 ms ✓ Roots 1754.5 ms ✓ Ipopt_jll 4404.0 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2528.6 ms ✓ HypergeometricFunctions 1393.9 ms ✓ DiffRules 3373.1 ms ✓ BenchmarkTools 1270.2 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 2525.5 ms ✓ WeakRefStrings 1586.0 ms ✓ HostCPUFeatures 2423.4 ms ✓ PolyesterWeave 1977.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 2095.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1906.0 ms ✓ CloseOpenIntervals 1744.8 ms ✓ LayoutPointers 5386.7 ms ✓ StatsBase 83360.0 ms ✓ DataFrames 4765.7 ms ✓ Interpolations 1494.1 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1652.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1114.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1425.7 ms ✓ Roots → RootsChainRulesCoreExt 1531.2 ms ✓ Ipopt 3049.2 ms ✓ StatsFuns 9620.7 ms ✓ ForwardDiff 4227.2 ms ✓ SQLite 31163.7 ms ✓ CSV 16537.5 ms ✓ VectorizationBase 1305.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3812.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 5606.1 ms ✓ StatsModels 10241.2 ms ✓ Distributions 4186.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1658.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1918.5 ms ✓ Roots → RootsForwardDiffExt 78454.7 ms ✓ MathOptInterface 8320.1 ms ✓ BGEN 5936.9 ms ✓ SLEEFPirates 3965.5 ms ✓ Distributions → DistributionsTestExt 4081.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 5467.1 ms ✓ HypothesisTests 4441.5 ms ✓ NLSolversBase 10570.8 ms ✓ NLopt 36012.0 ms ✓ Ipopt → IpoptMathOptInterfaceExt 44207.3 ms ✓ LoopVectorization 5193.6 ms ✓ VCFTools 6781.8 ms ✓ LineSearches 26410.0 ms ✓ WiSER 6143.9 ms ✓ LoopVectorization → SpecialFunctionsExt 6526.6 ms ✓ LoopVectorization → ForwardDiffExt 10698.2 ms ✓ Optim ✗ SnpArrays 8279.2 ms ✓ Optim → OptimMOIExt ✗ TrajGWAS 196 dependencies successfully precompiled in 937 seconds. 38 already precompiled. 3 dependencies had output during precompilation: ┌ VectorizationBase │ WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int16 end`. │ Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`. │ WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int64 end`. │ Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`. │ WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int32 end`. │ Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`. │ WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. │ Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. │ WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`. │ Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`. │ WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float32 end`. │ Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`. │ WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Bool end`. │ Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. │ WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int8 end`. │ Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`. │ WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float64 end`. │ Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`. │ WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`. │ Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`. │ WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float16 end`. │ Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`. └ ┌ Interpolations │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ERROR: LoadError: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_FUk0Ow" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_ax0u6Q" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 938.89s ################################################################################ # Loading # Loading TrajGWAS... Precompiling packages... ✗ SnpArrays Info Given TrajGWAS was explicitly requested, output will be shown live  ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [7] include_string  @ ./loading.jl:2834 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [9] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_r6n7KH" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] top-level scope  @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2978  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [24] include_string  @ ./loading.jl:2834 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [26] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin:5 ✗ TrajGWAS 0 dependencies successfully precompiled in 76 seconds. 234 already precompiled. ERROR: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_TlZmy7" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_r6n7KH" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin: Loading failed after 78.5s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using TrajGWAS'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:303 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1067.57s: package fails to precompile