Package evaluation of TMLE on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T08:17:06.489


################################################################################
# Set-up
#


Set-up completed after 0.22s


################################################################################
# Installation
#

Installing TMLE...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [8afdd2fb] + TMLE v0.18.1
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [a9b6321e] + Atomix v1.1.1
  [15f4f7f2] + AutoHashEquals v2.2.0
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [324d7699] + CategoricalArrays v0.10.8
  [af321ab8] + CategoricalDistributions v0.1.15
  [082447d4] + ChainRules v1.72.3
  [d360d2e6] + ChainRulesCore v1.25.1
  [3da002f7] + ColorTypes v0.12.1
  [861a8166] + Combinatorics v1.0.2
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [ed09eef8] + ComputationalResources v0.3.2
  [187b0558] + ConstructionBase v1.5.8
  [6add18c4] + ContextVariablesX v0.1.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [85a47980] + Dictionaries v0.4.5
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.52
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [5789e2e9] + FileIO v1.17.0
  [1a297f60] + FillArrays v1.13.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [f6369f11] + ForwardDiff v1.0.1
  [38e38edf] + GLM v1.9.0
  [46192b85] + GPUArraysCore v0.2.0
  [86223c79] + Graphs v1.12.1
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [09f84164] + HypothesisTests v0.11.5
  [7869d1d1] + IRTools v0.4.14
  [313cdc1a] + Indexing v1.1.1
  [d25df0c9] + Inflate v0.1.5
  [22cec73e] + InitialValues v0.3.1
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.5.13
  [692b3bcd] + JLLWrappers v1.7.0
  [b14d175d] + JuliaVariables v0.2.4
  [63c18a36] + KernelAbstractions v0.9.34
  [b964fa9f] + LaTeXStrings v1.4.0
  [92ad9a40] + LearnAPI v1.0.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [c2834f40] + MLCore v1.0.0
  [a7f614a8] + MLJBase v1.8.1
  [caf8df21] + MLJGLMInterface v0.3.7
  [e80e1ace] + MLJModelInterface v1.11.1
  [d491faf4] + MLJModels v0.17.9
  [d8e11817] + MLStyle v0.4.17
  [f1d291b0] + MLUtils v0.4.8
  [1914dd2f] + MacroTools v0.5.16
  [fa8bd995] + MetaGraphsNext v0.7.3
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [872c559c] + NNlib v0.9.30
  [77ba4419] + NaNMath v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [d96e819e] + Parameters v0.12.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [54e16d92] + PrettyPrinting v0.4.2
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [c1ae055f] + RealDot v0.1.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.7
  [321657f4] + ScientificTypes v3.1.0
  [30f210dd] + ScientificTypesBase v3.0.0
  [7e506255] + ScopedValues v1.3.0
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [1277b4bf] + ShiftedArrays v2.0.0
  [605ecd9f] + ShowCases v0.1.0
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [dc90abb0] + SparseInverseSubset v0.1.2
  [276daf66] + SpecialFunctions v2.5.1
  [03a91e81] + SplitApplyCombine v1.2.3
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [c062fc1d] + StatisticalMeasuresBase v0.1.2
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [09ab397b] + StructArrays v0.7.1
  [8afdd2fb] + TMLE v0.18.1
  [ab02a1b2] + TableOperations v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [3a884ed6] + UnPack v1.0.2
  [013be700] + UnsafeAtomics v0.3.0
  [e88e6eb3] + Zygote v0.7.6
  [700de1a5] + ZygoteRules v0.2.7
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2

Installation completed after 6.62s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
           ✗ Zygote
  21471.4 ms  ✓ MLJGLMInterface
           ✗ Zygote → ZygoteDistancesExt
           ✗ DifferentiationInterface → DifferentiationInterfaceZygoteExt
           ✗ TMLE
  1 dependency successfully precompiled in 230 seconds. 226 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

TMLE 

Failed to precompile TMLE [8afdd2fb-6e73-43df-8b62-b1650cd9c8cf] to "/home/pkgeval/.julia/compiled/v1.13/TMLE/jl_09bDrN" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:85
  [4] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:68 [inlined]
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_tNXZ8y" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/TMLE/2GKFh/src/TMLE.jl:14
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/TMLE/2GKFh/src/TMLE.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 236.91s



################################################################################
# Loading
#

Loading TMLE...
Precompiling packages...
           ✗ Zygote
           ✗ Zygote → ZygoteDistancesExt
           ✗ DifferentiationInterface → DifferentiationInterfaceZygoteExt
Info Given TMLE was explicitly requested, output will be shown live 
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:85
  [4] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:68 [inlined]
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_4jdJlA" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/TMLE/2GKFh/src/TMLE.jl:14
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/TMLE/2GKFh/src/TMLE.jl:1
in expression starting at stdin:5
           ✗ TMLE
  0 dependencies successfully precompiled in 156 seconds. 227 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

TMLE 

Failed to precompile TMLE [8afdd2fb-6e73-43df-8b62-b1650cd9c8cf] to "/home/pkgeval/.julia/compiled/v1.13/TMLE/jl_oUeM4E" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:85
  [4] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/Zygote/HdT4O/src/Zygote.jl:68 [inlined]
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/HdT4O/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_4jdJlA" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/TMLE/2GKFh/src/TMLE.jl:14
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/TMLE/2GKFh/src/TMLE.jl:1
in expression starting at stdin:

Loading failed after 157.96s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using TMLE'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 426.38s: package fails to precompile