Package evaluation of SymbolicQuartetNetworkCoal on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T05:46:08.302


################################################################################
# Set-up
#


Set-up completed after 0.24s


################################################################################
# Installation
#

Installing SymbolicQuartetNetworkCoal...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [4201568c] + SymbolicQuartetNetworkCoal v0.1.6
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [67c07d97] + Automa v1.1.0
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [861a8166] + Combinatorics v1.0.2
  [34da2185] + Compat v4.16.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
  [c2308a5c] + FASTX v2.1.7
  [343a5541] + FileCmp v1.0.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [76087f3c] + NLopt v1.1.3
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [69de0a69] + Parsers v2.8.3
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.8.0
  [fdea26ae] + SIMD v3.7.1
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
  [4201568c] + SymbolicQuartetNetworkCoal v0.1.6
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [7200193e] + Twiddle v1.1.2
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [079eb43e] + NLopt_jll v2.10.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 6.48s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
           ✗ NLopt
           ✗ PhyloNetworks
           ✗ SymbolicQuartetNetworkCoal
  0 dependencies successfully precompiled in 88 seconds. 99 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

SymbolicQuartetNetworkCoal 

Failed to precompile SymbolicQuartetNetworkCoal [4201568c-2e61-4571-8a9c-4da1ec7770d0] to "/home/pkgeval/.julia/compiled/v1.13/SymbolicQuartetNetworkCoal/jl_u8YvZt" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2978
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2824
 [7] include_string
   @ ./loading.jl:2834 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_kWLUg4" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_oiFC4S" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:9
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:3
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 100.01s



################################################################################
# Loading
#

Loading SymbolicQuartetNetworkCoal...
Precompiling packages...
           ✗ NLopt
           ✗ PhyloNetworks
Info Given SymbolicQuartetNetworkCoal was explicitly requested, output will be shown live 
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2978
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2824
 [7] include_string
   @ ./loading.jl:2834 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_tvIgSW" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_rssrPP" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:9
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:3
in expression starting at stdin:5
           ✗ SymbolicQuartetNetworkCoal
  0 dependencies successfully precompiled in 74 seconds. 99 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

SymbolicQuartetNetworkCoal 

Failed to precompile SymbolicQuartetNetworkCoal [4201568c-2e61-4571-8a9c-4da1ec7770d0] to "/home/pkgeval/.julia/compiled/v1.13/SymbolicQuartetNetworkCoal/jl_lBXHym" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2978
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2824
 [7] include_string
   @ ./loading.jl:2834 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_tvIgSW" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_rssrPP" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:9
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/SymbolicQuartetNetworkCoal/n4813/src/SymbolicQuartetNetworkCoal.jl:3
in expression starting at stdin:

Loading failed after 77.07s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using SymbolicQuartetNetworkCoal'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 202.51s: package has syntax issues