Package evaluation of StateSpaceDynamics on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T04:55:38.408 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.05s ################################################################################ # Installation # Installing StateSpaceDynamics... Resolving package versions... Installed Rmath ──────────────────── v0.8.0 Installed IrrationalConstants ────── v0.2.4 Installed Adapt ──────────────────── v4.3.0 Installed HypergeometricFunctions ── v0.3.28 Installed DiffRules ──────────────── v1.15.1 Installed StatsFuns ──────────────── v1.5.0 Installed Preferences ────────────── v1.4.3 Installed PtrArrays ──────────────── v1.3.0 Installed DiffResults ────────────── v1.1.0 Installed ADTypes ────────────────── v1.14.0 Installed PositiveFactorizations ─── v0.2.4 Installed PDMats ─────────────────── v0.11.34 Installed DataAPI ────────────────── v1.16.0 Installed SpecialFunctions ───────── v2.5.1 Installed Setfield ───────────────── v1.1.2 Installed JLLWrappers ────────────── v1.7.0 Installed ProgressMeter ──────────── v1.10.4 Installed NaNMath ────────────────── v1.1.3 Installed StaticArraysCore ───────── v1.4.3 Installed StaticArrays ───────────── v1.9.13 Installed OrderedCollections ─────── v1.8.0 Installed ConstructionBase ───────── v1.5.8 Installed Optim ──────────────────── v1.12.0 Installed PrecompileTools ────────── v1.3.2 Installed EnumX ──────────────────── v1.0.5 Installed NLSolversBase ──────────── v7.9.1 Installed ArrayInterface ─────────── v7.18.0 Installed QuadGK ─────────────────── v2.11.2 Installed ForwardDiff ────────────── v0.10.38 Installed Reexport ───────────────── v1.2.2 Installed LineSearches ───────────── v7.3.0 Installed FillArrays ─────────────── v1.13.0 Installed Rmath_jll ──────────────── v0.5.1+0 Installed Statistics ─────────────── v1.11.1 Installed CommonSubexpressions ───── v0.3.1 Installed Requires ───────────────── v1.3.1 Installed LogExpFunctions ────────── v0.3.29 Installed AliasTables ────────────── v1.1.3 Installed DataStructures ─────────── v0.18.22 Installed MacroTools ─────────────── v0.5.16 Installed StatsAPI ───────────────── v1.7.0 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed Compat ─────────────────── v4.16.0 Installed UnPack ─────────────────── v1.0.2 Installed Parameters ─────────────── v0.12.3 Installed Distributions ──────────── v0.25.119 Installed Missings ───────────────── v1.2.0 Installed DocStringExtensions ────── v0.9.4 Installed StatsBase ──────────────── v0.34.4 Installed SortingAlgorithms ──────── v1.2.1 Installed ArrayLayouts ───────────── v1.11.1 Installed FiniteDiff ─────────────── v2.27.0 Installed DifferentiationInterface ─ v0.6.52 Installed StateSpaceDynamics ─────── v0.1.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [19cf8126] + StateSpaceDynamics v0.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [19cf8126] + StateSpaceDynamics v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building StateSpaceDynamics → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ec6b0fe096ace18afbae1bd8cfc34fe6bef7436/build.log` Installation completed after 12.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6508.3 ms ✓ TestEnv 1 dependency successfully precompiled in 7 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 640.78s ################################################################################ # Testing # Testing StateSpaceDynamics Status `/tmp/jl_WssyAX/Project.toml` [4c88cf16] Aqua v0.8.11 [336ed68f] CSV v0.10.15 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.119 ⌅ [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v2.1.2 [23992714] MAT v0.10.7 [429524aa] Optim v1.12.0 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [4c63d2b9] StatsFuns v1.5.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WssyAX/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.52 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.16 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers 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v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package Wide Tests | 11 11 1m12.5s Test Summary: | Pass Total Time SLDS Tests | 4062 4062 2m00.7s Fitting LDS via EM... 5%|██▌ | ETA: 0:00:02 (23.77 ms/it) Fitting LDS via EM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 (11.18 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (11.09 ms/it) Fitting LDS via EM... 4%|██ | ETA: 0:00:03 (32.06 ms/it) Fitting LDS via EM... 9%|████▌ | ETA: 0:00:03 (27.68 ms/it) Fitting LDS via EM... 13%|██████▌ | ETA: 0:00:02 (28.55 ms/it) Fitting LDS via EM... 17%|████████▌ | ETA: 0:00:02 (28.07 ms/it) Fitting LDS via EM... 21%|██████████▌ | ETA: 0:00:02 (28.11 ms/it) Fitting LDS via EM... 26%|█████████████ | ETA: 0:00:02 (27.49 ms/it) Fitting LDS via EM... 30%|███████████████ | ETA: 0:00:02 (27.25 ms/it) Fitting LDS via EM... 34%|█████████████████ | ETA: 0:00:02 (27.48 ms/it) Fitting LDS via EM... 38%|███████████████████ | ETA: 0:00:02 (27.56 ms/it) Fitting LDS via EM... 42%|█████████████████████ | ETA: 0:00:02 (28.50 ms/it) Fitting LDS via EM... 45%|██████████████████████▌ | ETA: 0:00:02 (29.38 ms/it) Fitting LDS via EM... 48%|████████████████████████ | ETA: 0:00:02 (29.69 ms/it) Fitting LDS via EM... 51%|█████████████████████████▌ | ETA: 0:00:02 (30.73 ms/it) Fitting LDS via EM... 55%|███████████████████████████▌ | ETA: 0:00:01 (30.88 ms/it) Fitting LDS via EM... 58%|█████████████████████████████ | ETA: 0:00:01 (31.96 ms/it) Fitting LDS via EM... 62%|███████████████████████████████ | ETA: 0:00:01 (32.12 ms/it) Fitting LDS via EM... 65%|████████████████████████████████▌ | ETA: 0:00:01 (32.36 ms/it) Fitting LDS via EM... 68%|██████████████████████████████████ | ETA: 0:00:01 (32.97 ms/it) Fitting LDS via EM... 72%|████████████████████████████████████ | ETA: 0:00:01 (32.76 ms/it) Fitting LDS via EM... 75%|█████████████████████████████████████▌ | ETA: 0:00:01 (33.18 ms/it) Fitting LDS via EM... 78%|███████████████████████████████████████ | ETA: 0:00:01 (33.51 ms/it) Fitting LDS via EM... 82%|█████████████████████████████████████████ | ETA: 0:00:01 (33.45 ms/it) Fitting LDS via EM... 85%|██████████████████████████████████████████▌ | ETA: 0:00:01 (33.75 ms/it) Fitting LDS via EM... 88%|████████████████████████████████████████████ | ETA: 0:00:00 (33.86 ms/it) Fitting LDS via EM... 91%|█████████████████████████████████████████████▌ | ETA: 0:00:00 (34.05 ms/it) Fitting LDS via EM... 94%|███████████████████████████████████████████████ | ETA: 0:00:00 (34.28 ms/it) Fitting LDS via EM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 (34.49 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:03 (34.40 ms/it) EM tests: Test Failed at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:296 Expression: all(diff(ml_total) .>= 0) Evaluated: all(Bool[1, 1, 1, 1, 1, 1, 1, 1, 1, 1 … 0, 1, 1, 1, 1, 1, 1, 1, 1, 1]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:731 [inlined] [2] test_EM(n_trials::Int64) @ Main ~/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:296 [3] top-level scope @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:49 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [5] macro expansion @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:59 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [7] macro expansion @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:70 [inlined] Test Summary: | Pass Fail Total Time GaussianLDS Tests | 65 1 66 2m23.2s Constructor Tests | 34 34 3.5s Smoother tests | 12 12 45.6s EM tests | 19 1 20 1m34.1s RNG of the outermost testset: Xoshiro(0x3c3dab7fe9e5dea6, 0x4f78dbd5faa5d5be, 0x450ab8597a1e8aab, 0xddf643cd0d0a9acd, 0x9599b35c97ba50d2) ERROR: LoadError: Some tests did not pass: 65 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:48 Testing failed after 378.23s ERROR: LoadError: Package StateSpaceDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1202.48s: package has test failures