Package evaluation of SpatialDependence on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:13:07.370 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.21s ################################################################################ # Installation # Installing SpatialDependence... Resolving package versions... Installed GeoInterfaceRecipes ───────── v1.0.2 Installed IrrationalConstants ───────── v0.2.4 Installed TableTraits ───────────────── v1.0.1 Installed PtrArrays ─────────────────── v1.3.0 Installed StableRNGs ────────────────── v1.0.2 Installed TensorCore ────────────────── v0.1.1 Installed ColorTypes ────────────────── v0.12.1 Installed Preferences ───────────────── v1.4.3 Installed DataAPI ───────────────────── v1.16.0 Installed RecipesBase ───────────────── v1.3.4 Installed Tables ────────────────────── v1.12.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Extents ───────────────────── v0.1.5 Installed StaticArrays ──────────────── v1.9.13 Installed StaticArraysCore ──────────── v1.4.3 Installed NearestNeighbors ──────────── v0.4.21 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ColorVectorSpace ──────────── v0.11.0 Installed PlotUtils ─────────────────── v1.4.3 Installed DataValueInterfaces ───────── v1.0.0 Installed PrecompileTools ───────────── v1.3.2 Installed Reexport ──────────────────── v1.2.2 Installed OrderedCollections ────────── v1.8.0 Installed Statistics ────────────────── v1.11.1 Installed DataStructures ────────────── v0.18.22 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed AliasTables ───────────────── v1.1.3 Installed Colors ────────────────────── v0.13.0 Installed StatsAPI ──────────────────── v1.7.0 Installed GeoInterface ──────────────── v1.4.1 Installed Compat ────────────────────── v4.16.0 Installed GeoFormatTypes ────────────── v0.4.4 Installed SpatialDependence ─────────── v0.4.2 Installed Distances ─────────────────── v0.10.12 Installed Missings ──────────────────── v1.2.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed DocStringExtensions ───────── v0.9.4 Installed StatsBase ─────────────────── v0.34.4 Installed ColorSchemes ──────────────── v3.29.0 Updating `~/.julia/environments/v1.13/Project.toml` [011225bf] + SpatialDependence v0.4.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [411431e0] + Extents v0.1.5 [53c48c17] + FixedPointNumbers v0.8.5 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [0329782f] + GeoInterfaceRecipes v1.0.2 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.0 [995b91a9] + PlotUtils v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [a2af1166] + SortingAlgorithms v1.2.1 [011225bf] + SpatialDependence v0.4.2 [860ef19b] + StableRNGs v1.0.2 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 5.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5950.6 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 395.24s ################################################################################ # Testing # Testing SpatialDependence Status `/tmp/jl_HHSAE1/Project.toml` [cf35fbd7] GeoInterface v1.4.1 [0329782f] GeoInterfaceRecipes v1.0.2 [b8a86587] NearestNeighbors v0.4.21 [995b91a9] PlotUtils v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 [c34fe46e] SpatialDatasets v0.1.7 [011225bf] SpatialDependence v0.4.2 [860ef19b] StableRNGs v1.0.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [bd369af6] Tables v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HHSAE1/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [75c7ada1] DBFTables v1.2.7 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [411431e0] Extents v0.1.5 [53c48c17] FixedPointNumbers v0.8.5 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [0edc0954] GeoInterfaceMakie v0.1.9 [0329782f] GeoInterfaceRecipes v1.0.2 [5c1252a2] GeometryBasics v0.5.7 [842dd82b] InlineStrings v1.4.3 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [20f20a25] MakieCore v0.9.2 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.3 [995b91a9] PlotUtils v1.4.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [8e980c4a] Shapefile v0.13.2 [a2af1166] SortingAlgorithms v1.2.1 [c34fe46e] SpatialDatasets v0.1.7 [011225bf] SpatialDependence v0.4.2 [860ef19b] StableRNGs v1.0.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [ea10d353] WeakRefStrings v1.4.2 [5ae413db] EarCut_jll v2.2.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Downloading artifact: GeoDaGuerry Downloading artifact: GeoDaBostonhsg Bostonhsg: Error During Test at /home/pkgeval/.julia/packages/SpatialDependence/v3z4U/test/bostonhsg.jl:2 Got exception outside of a @test MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Matrix{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Matrix{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std(A::Matrix{Float64}, corrected::Bool, mean::Matrix{Float64}, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] #mean_and_std#28 @ ~/.julia/packages/StatsBase/xgoZ5/src/moments.jl:142 [inlined] [12] mean_and_std @ ~/.julia/packages/StatsBase/xgoZ5/src/moments.jl:140 [inlined] [13] fit(::Type{StatsBase.ZScoreTransform}, X::Matrix{Float64}; dims::Int64, center::Bool, scale::Bool) @ StatsBase ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:0 [14] fit @ ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:109 [inlined] [15] #fit#227 @ ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:136 [inlined] [16] fit @ ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:130 [inlined] [17] #standardize#234 @ ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:367 [inlined] [18] standardize(::Type{StatsBase.ZScoreTransform}, X::Vector{Float64}) @ StatsBase ~/.julia/packages/StatsBase/xgoZ5/src/transformations.jl:366 [19] macro expansion @ ~/.julia/packages/SpatialDependence/v3z4U/src/plotrecipes.jl:20 [inlined] [20] apply_recipe(plotattributes::AbstractDict{Symbol, Any}, x::Vector, W::SpatialWeights) @ SpatialDependence ~/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:300 [21] top-level scope @ ~/.julia/packages/SpatialDependence/v3z4U/test/bostonhsg.jl:4 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [23] macro expansion @ ~/.julia/packages/SpatialDependence/v3z4U/test/bostonhsg.jl:90 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:980 [inlined] [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [26] top-level scope @ ~/.julia/packages/SpatialDependence/v3z4U/test/runtests.jl:10 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [28] macro expansion @ ~/.julia/packages/SpatialDependence/v3z4U/test/runtests.jl:12 [inlined] [29] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [30] top-level scope @ none:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:489 [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [33] _start() @ Base ./client.jl:563 Test Summary: | Pass Error Total Time SpatialDependence.jl | 434 1 435 4m13.5s Spatial Weights | 185 185 50.0s Guerry | 129 129 1m55.1s Bostonhsg | 37 1 38 27.1s Choropleth Maps | 78 78 44.3s Random | 5 5 1.7s RNG of the outermost testset: Random.Xoshiro(0xb1df888708b4db45, 0xe82b5441fea38600, 0xf6a5b810339a1c6a, 0x78400be8cff81c0f, 0x855e70fbb66abfc0) ERROR: LoadError: Some tests did not pass: 434 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SpatialDependence/v3z4U/test/runtests.jl:8 Testing failed after 287.82s ERROR: LoadError: Package SpatialDependence errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 724.65s: package tests unexpectedly errored