Package evaluation of SDeMo on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:51:34.146 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.77s ################################################################################ # Installation # Installing SDeMo... Resolving package versions... Installed IrrationalConstants ───── v0.2.4 Installed Rmath ─────────────────── v0.8.0 Installed HypergeometricFunctions ─ v0.3.28 Installed PtrArrays ─────────────── v1.3.0 Installed StatsFuns ─────────────── v1.5.0 Installed JSON ──────────────────── v0.21.4 Installed Preferences ───────────── v1.4.3 Installed Parsers ───────────────── v2.8.3 Installed Arpack_jll ────────────── v3.5.1+1 Installed PDMats ────────────────── v0.11.34 Installed DataAPI ───────────────── v1.16.0 Installed JLLWrappers ───────────── v1.7.0 Installed SpecialFunctions ──────── v2.5.1 Installed OrderedCollections ────── v1.8.0 Installed PrecompileTools ───────── v1.3.2 Installed TestItems ─────────────── v1.0.0 Installed Rmath_jll ─────────────── v0.5.1+0 Installed Reexport ──────────────── v1.2.2 Installed FillArrays ────────────── v1.13.0 Installed Statistics ────────────── v1.11.1 Installed QuadGK ────────────────── v2.11.2 Installed DataStructures ────────── v0.18.22 Installed Arpack ────────────────── v0.5.4 Installed StatsAPI ──────────────── v1.7.0 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed LogExpFunctions ───────── v0.3.29 Installed AliasTables ───────────── v1.1.3 Installed Compat ────────────────── v4.16.0 Installed Missings ──────────────── v1.2.0 Installed SDeMo ─────────────────── v1.4.0 Installed SortingAlgorithms ─────── v1.2.1 Installed MultivariateStats ─────── v0.10.3 Installed DocStringExtensions ───── v0.9.4 Installed StatsBase ─────────────── v0.34.4 Installed Distributions ─────────── v0.25.119 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Arpack 147.2 KiB Updating `~/.julia/environments/v1.13/Project.toml` [3e5feb82] + SDeMo v1.4.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [3e5feb82] + SDeMo v1.4.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [1c621080] + TestItems v1.0.0 ⌅ [68821587] + Arpack_jll v3.5.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5711.2 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 160.02s ################################################################################ # Testing # Testing SDeMo Status `/tmp/jl_V1FJKC/Project.toml` [3e5feb82] SDeMo v1.4.0 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_V1FJKC/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [3e5feb82] SDeMo v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 ⌅ [68821587] Arpack_jll v3.5.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: TaskFailedException Stacktrace: [1] #wait#586 @ ./task.jl:363 [inlined] [2] wait @ ./task.jl:360 [inlined] [3] fetch @ ./task.jl:525 [inlined] [4] _broadcast_getindex_evalf @ ./broadcast.jl:699 [inlined] [5] _broadcast_getindex @ ./broadcast.jl:672 [inlined] [6] _getindex @ ./broadcast.jl:620 [inlined] [7] getindex @ ./broadcast.jl:616 [inlined] [8] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast ./broadcast.jl:933 [9] materialize @ ./broadcast.jl:894 [inlined] [10] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/crossvalidation/crossvalidation.jl:202 [11] crossvalidate @ ~/.julia/packages/SDeMo/WBmCZ/src/crossvalidation/crossvalidation.jl:182 [inlined] [12] variables!(model::SDeMo.SDM{Float64, Bool}, ::Type{SDeMo.ForwardSelection}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; included::Vector{Int64}, optimality::typeof(SDeMo.mcc), verbose::Bool, bagfeatures::Bool, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/variables/varsel.jl:155 [13] variables!(model::SDeMo.SDM{Float64, Bool}, ::Type{SDeMo.ForwardSelection}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/variables/varsel.jl:121 [14] top-level scope @ ~/.julia/packages/SDeMo/WBmCZ/src/variables/varsel.jl:228 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [17] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2834 [18] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] [19] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 [20] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] [21] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [22] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 [23] run_tests(path::String; filter::var"#2#3", verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 [24] top-level scope @ ~/.julia/packages/SDeMo/WBmCZ/test/runtests.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [26] top-level scope @ none:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [29] _start() @ Base ./client.jl:563 nested task error: MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Matrix{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Matrix{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] #train!#4 @ ~/.julia/packages/SDeMo/WBmCZ/src/transformers/univariate.jl:41 [inlined] [12] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/transformers/univariate.jl:39 [13] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::Function, absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/pipeline.jl:30 [14] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/crossvalidation/crossvalidation.jl:214 [15] (::SDeMo.var"#124#125"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/WBmCZ/src/crossvalidation/crossvalidation.jl:196 in expression starting at /home/pkgeval/.julia/packages/SDeMo/WBmCZ/src/variables/varsel.jl:228 in expression starting at /home/pkgeval/.julia/packages/SDeMo/WBmCZ/test/runtests.jl:3 Testing failed after 274.41s ERROR: LoadError: Package SDeMo errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 475.93s: package tests unexpectedly errored