Package evaluation of RobertoMD on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T03:20:01.841


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.77s


################################################################################
# Installation
#

Installing RobertoMD...
   Resolving package versions...
   Installed MPI ─ v0.19.2
    Updating `~/.julia/environments/v1.13/Project.toml`
  [1a988cff] + RobertoMD v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [31c24e10] + Distributions v0.25.119
⌅ [ffbed154] + DocStringExtensions v0.8.6
  [1a297f60] + FillArrays v1.13.0
  [59287772] + Formatting v0.4.3
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [2ab3a3ac] + LogExpFunctions v0.3.29
⌅ [da04e1cc] + MPI v0.19.2
  [3da0fdf6] + MPIPreferences v0.1.11
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [1a988cff] + RobertoMD v0.1.0
  [d5f540fe] + RoundingIntegers v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.5.0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building MPI → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/d56a80d8cf8b9dc3050116346b3d83432b1912c0/build.log`

Installation completed after 17.43s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 39.52s


################################################################################
# Testing
#

     Testing RobertoMD
      Status `/tmp/jl_bTe5KI/Project.toml`
  [31c24e10] Distributions v0.25.119
  [59287772] Formatting v0.4.3
  [682c06a0] JSON v0.21.4
⌅ [da04e1cc] MPI v0.19.2
  [92933f4c] ProgressMeter v1.10.4
  [1a988cff] RobertoMD v0.1.0
  [d5f540fe] RoundingIntegers v1.1.0
  [90137ffa] StaticArrays v1.9.13
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_bTe5KI/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [34da2185] Compat v4.16.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [31c24e10] Distributions v0.25.119
⌅ [ffbed154] DocStringExtensions v0.8.6
  [1a297f60] FillArrays v1.13.0
  [59287772] Formatting v0.4.3
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [2ab3a3ac] LogExpFunctions v0.3.29
⌅ [da04e1cc] MPI v0.19.2
  [3da0fdf6] MPIPreferences v0.1.11
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.34
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [1a988cff] RobertoMD v0.1.0
  [d5f540fe] RoundingIntegers v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.5.0
  [e33a78d0] Hwloc_jll v2.12.0+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
[ Info: Timestep dt: 0.01
[ Info: Simulation Total Steps: 1000
[ Info: Box Lx Ly Lz: 5.0 5.0 5.0
[ Info: CPU Loading Information: CPU_index Num_Atoms
[ Info: CPU Loading Information: 1 10
[ Info: CPU Loading Average: 10.0 Atoms with Deviation: 0.0
[ Info: Initialize Types Size 10
[ Info: Velocity Velert Integrator
[ Info: Zero Velocity Initialization
[ Info: Initialize Masses Size 10
[ Info: Initialize Coordinates Size 10
[ Info: Initialize Forces Size 10
[ Info: Initialize Velocities Size 10
[ Info: Initialize Energy Size 10
[ Info: Log Thermo Information Every: 100
[ Info: BerendsenNVT Thermostat with tau 1.0
[ Info: Create UniformMesh with 5 Cells, Real Cell Length: 1.0
[ Info: Employing Canonical Field with Cell Length 1.0, Field Update every 1
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:79
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:79
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:80
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:80
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:81
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:81
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:83
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:83
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:84
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:84
┌ Warning: `Scatterv(sendbuf, counts::Vector, root::Integer, comm::Comm)` is deprecated, use `if MPI.Comm_rank(comm) == root
│     Scatterv!(VBuffer(sendbuf, counts), similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ else
│     Scatterv!(nothing, similar(sendbuf, counts[Comm_rank(comm) + 1]), root, comm)
│ end` instead.
│   caller = Simulate(inputs::Dict{String, Any}, config::Dict{String, Any}) at simulation.jl:85
└ @ Core ~/.julia/packages/RobertoMD/8ZfVA/src/core/simulation.jl:85
(step, temp) = (1, 0.0)

Progress:   0%|                           |  ETA: 1:14:30 ( 4.48  s/it)(step, temp) = (100, 0.6025920092669016)
(step, temp) = (200, 0.8991357936889669)
(step, temp) = (300, 0.954557115071691)
(step, temp) = (400, 1.049765257115818)
(step, temp) = (500, 0.9786032355175126)
(step, temp) = (600, 1.1426026167356609)
(step, temp) = (700, 1.1133323131947037)
(step, temp) = (800, 1.034745269593877)
(step, temp) = (900, 0.9673791459403863)
(step, temp) = (1000, 1.1298903912459268)
Test Summary: | Total   Time
monoliquid    |     0  48.4s
     Testing RobertoMD tests passed 

Testing completed after 68.9s

PkgEval succeeded after 151.9s