Package evaluation of QuantumDynamicsCLI on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T12:51:43.803 ################################################################################ # Set-up # Set-up completed after 0.25s ################################################################################ # Installation # Installing QuantumDynamicsCLI... Resolving package versions... Installed QuantumDynamicsCLI ─ v0.1.0 Updating `~/.julia/environments/v1.13/Project.toml` [7b5053f5] + QuantumDynamicsCLI v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 ⌅ [a963bdd2] + AtomsBase v0.3.5 ⌅ [1692102d] + AtomsIO v0.2.3 [13072b0f] + AxisAlgorithms v1.1.0 [198e06fe] + BangBang v0.4.4 [91aaffc3] + BaryRational v1.1.1 [9718e550] + Baselet v0.1.1 [c3b6d118] + BitIntegers v0.3.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.6.3 [70df07ce] + BracketingNonlinearSolve v1.2.0 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 ⌃ [46823bd8] + Chemfiles v0.10.41 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [863f3e99] + Comonicon v1.0.8 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [5218b696] + Configurations v0.17.6 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [2b5f629d] + DiffEqBase v6.170.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [da5c29d0] + EllipsisNotation v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.8 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 ⌅ [352459e4] + ExtXYZ v0.1.14 [e189563c] + ExternalDocstrings v0.1.1 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [41a02a25] + Folds v0.2.10 [9c68100b] + FoldsThreads v0.1.2 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [14197337] + GenericLinearAlgebra v0.3.17 [c145ed77] + GenericSchur v0.5.5 [c27321d9] + Glob v1.3.1 [f67ccb44] + HDF5 v0.17.2 [f0d1745a] + HalfIntegers v1.6.0 [34004b35] + HypergeometricFunctions v0.3.28 ⌃ [0d1a4710] + ITensorMPS v0.3.6 ⌅ [9136182c] + ITensors v0.7.13 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + 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[8913a72c] + NonlinearSolve v4.8.0 [be0214bd] + NonlinearSolveBase v1.6.0 [5959db7a] + NonlinearSolveFirstOrder v1.4.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.3.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.0 [1dea7af3] + OrdinaryDiffEq v6.95.1 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] + OrdinaryDiffEqBDF v1.5.0 [bbf590c4] + OrdinaryDiffEqCore v1.23.0 [50262376] + OrdinaryDiffEqDefault v1.3.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.7.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.10.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] + OrdinaryDiffEqLinear v1.1.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.6.1 [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.0 [5b33eab2] + OrdinaryDiffEqPRK v1.1.0 [04162be5] + OrdinaryDiffEqQPRK v1.1.0 [af6ede74] + OrdinaryDiffEqRKN v1.1.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.9.0 [2d112036] + OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.3.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] + OrdinaryDiffEqVerner v1.2.0 [90014a1f] + PDMats v0.11.34 [9b87118b] + PackageCompiler v2.2.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.26 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [5a40c529] + QuantumDynamics v0.2.28 [7b5053f5] + QuantumDynamicsCLI v0.1.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.14 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.86.2 [19f34311] + SciMLJacobianOperators v0.1.3 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [6c6a2e73] + Scratch v1.2.1 [d3ce8812] + SerializedElementArrays v0.1.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.3.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.19 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [5e0ebb24] + Strided v2.3.0 ⌅ [4db3bf67] + StridedViews v0.3.2 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.40 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [24d252fe] + ThreadedScans v0.1.0 [8290d209] + ThreadingUtilities v0.5.3 [a759f4b9] + TimerOutputs v0.5.28 [28d57a85] + Transducers v0.4.84 [781d530d] + TruncatedStacktraces v1.4.0 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.0 [a7773ee8] + UnitfulAtomic v1.0.0 [409d34a3] + VectorInterface v0.5.0 [efce3f68] + WoodburyMatrices v1.0.0 [02310045] + XCrySDenStructureFormat v0.1.1 [bd1ec220] + Zeros v0.3.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 ⌅ [856f044c] + MKL_jll v2024.2.0+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [477f73a3] + libaec_jll v1.1.3+0 [cdc7adba] + libcleri_jll v0.12.1+3 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building QuantumDynamicsCLI → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f1291c63296b2199e1a4d003947b1ea9c1f1b769/build.log` ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x73e579fd0f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000073e547db4a60 Total snapshots: 226. Utilization: 0% ╎226 @Base/task.jl:1150 wait_forever() 225╎ 226 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x000073e56fffc100 Total snapshots: 226. Utilization: 0% ╎226 @Base/task.jl:1150 wait_forever() 225╎ 226 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 unknown function (ip: 0x73e579fd0f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 20287450 (Pool: 20286901; Big: 549); GC: 13 PkgEval terminated after 2737.94s: test duration exceeded the time limit