Package evaluation of PlantGraphs on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T10:24:27.747 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.29s ################################################################################ # Installation # Installing PlantGraphs... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [615ad455] + PlantGraphs v0.0.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [d360d2e6] + ChainRulesCore v1.25.1 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [411431e0] + Extents v0.1.5 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.0.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌃ [1ecd5474] + GraphMakie v0.5.10 [86223c79] + Graphs v1.12.1 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.2 [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.30 [8197267c] + IntervalSets v0.7.11 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.9 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [d3d80556] + LineSearches v7.3.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [f09324ee] + Netpbm v1.1.1 [46757867] + NetworkLayout v0.4.10 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [615ad455] + PlantGraphs v0.0.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 [3a141323] + PolynomialRoots v1.0.0 [f27b6e38] + Polynomials v4.0.19 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.1 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [55797a34] + SimpleGraphs v0.8.6 [ec83eff0] + SimplePartitions v0.3.3 [cc47b68c] + SimplePolynomials v0.2.18 [a6525b86] + SimpleRandom v0.3.2 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [c5dd0088] + StableHashTraits v1.3.4 [860ef19b] + StableRNGs v1.0.2 [cae243ae] + StackViews v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.3 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [9602ed7d] + Unrolled v0.1.5 [ecbed89c] + WeakKeyIdDicts v0.1.0 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 ⌃ [83423d85] + Cairo_jll v1.18.4+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 [b22a6f82] + FFMPEG_jll v7.1.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [78b55507] + Gettext_jll v0.21.0+0 [59f7168a] + Giflib_jll v5.2.3+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 [856f044c] + MKL_jll v2025.0.1+1 [e7412a2a] + Ogg_jll v1.3.5+1 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [b53b4c65] + libpng_jll v1.6.47+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [c5f90fcd] + libwebp_jll v1.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 884.2s ################################################################################ # Testing # Testing PlantGraphs Status `/tmp/jl_Muyete/Project.toml` [4c88cf16] Aqua v0.8.11 ⌃ [13f3f980] CairoMakie v0.11.9 [e30172f5] Documenter v1.10.2 [86223c79] Graphs v1.12.1 [615ad455] PlantGraphs v0.0.3 [fd094767] Suppressor v0.2.8 [8dfed614] Test v1.11.0 Status `/tmp/jl_Muyete/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.11 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌃ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.52 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.2 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [411431e0] Extents v0.1.5 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [d7ba0133] Git v1.3.1 ⌃ [1ecd5474] GraphMakie v0.5.10 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.12.1 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.2 [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.30 [8197267c] IntervalSets v0.7.11 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.1 [d3d80556] LineSearches v7.3.0 [9b3f67b0] LinearAlgebraX v0.2.10 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.20.8 ⌅ [20f20a25] MakieCore v0.7.3 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 ⌅ [0a4f8689] MathTeXEngine v0.5.7 [e1d29d7a] Missings v1.2.0 [7475f97c] Mods v2.2.6 [e94cdb99] MosaicViews v0.3.4 [3b2b4ff1] Multisets v0.4.5 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [f09324ee] Netpbm v1.1.1 [46757867] NetworkLayout v0.4.10 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [3bbf5609] PikaParser v0.6.1 [eebad327] PkgVersion v0.3.3 [615ad455] PlantGraphs v0.0.3 [995b91a9] PlotUtils v1.4.3 [647866c9] PolygonOps v0.1.2 [3a141323] PolynomialRoots v1.0.0 [f27b6e38] Polynomials v4.0.19 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [286e9d63] RingLists v0.2.9 [79098fc4] Rmath v0.8.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.1 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 ⌅ [65257c39] ShaderAbstractions v0.4.1 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [55797a34] SimpleGraphs v0.8.6 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[deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 55626.9 ms ✓ GraphMakie 55906.8 ms ✓ PlantGraphs 2 dependencies successfully precompiled in 117 seconds. 319 already precompiled. 1 dependency had output during precompilation: ┌ GraphMakie │ WARNING: Constructor for type "Pointf" was extended in `GraphMakie` without explicit qualification or import. │ NOTE: Assumed "Pointf" refers to `GeometryBasics.Pointf`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Pointf end`. │ Hint: To silence the warning, qualify `Pointf` as `GeometryBasics.Pointf` in the method signature or explicitly `import GeometryBasics: Pointf`. └ Precompiling packages... 8994.5 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 11 seconds. 49 already precompiled. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/utilities/utilities.jl:660 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. ┌ Error: doctest failure in ../src/GraphConstruction.jl:58-68 │ │ ```jldoctest │ julia> struct A1 <: Node val::Int end; │ │ julia> struct B1 <: Node val::Int end; │ │ julia> axiom = A1(1) + B1(1); │ │ julia> import CairoMakie; # or GLMakie, WGLMakie, etc. │ │ julia> draw(axiom); │ ``` │ │ Subexpression: │ │ import CairoMakie; # or GLMakie, WGLMakie, etc. │ │ Evaluated output: │ │ Precompiling packages... │ 32162.8 ms ✓ ImageCore │ 123015.0 ms ✓ TiffImages │ 7729.2 ms ✓ OpenEXR │ 2303.4 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt │ 3003.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt │ 2719.1 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt │ 3615.6 ms ✓ Cairo │ 4922.6 ms ✓ ImageBase │ 7646.2 ms ✓ PNGFiles │ 12262.0 ms ✓ JpegTurbo │ 12007.9 ms ✓ Sixel │ 10301.5 ms ✓ WebP │ 5170.6 ms ✓ NLSolversBase │ 7017.6 ms ✓ ImageAxes │ 7069.2 ms ✓ LineSearches │ 5534.7 ms ✓ ImageMetadata │ 11123.1 ms ✓ Optim │ 9570.5 ms ✓ Netpbm │ Info Given CairoMakie was explicitly requested, output will be shown live  │ WARNING: importing deprecated binding Makie.Combined into CairoMakie. │ , use Plot instead. │ WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. │ , use VertexGrid instead. │ WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. │ , use CellGrid instead. │ 161691.2 ms ✓ CairoMakie │ 19 dependencies successfully precompiled in 432 seconds. 298 already precompiled. │ 1 dependency had output during precompilation: │ ┌ CairoMakie │ │ [Output was shown above] │ └ │ │ Expected output: │ │ │ │ diff = │ Warning: Diff output requires color. │ Precompiling packages... │ 32162.8 ms ✓ ImageCore │ 123015.0 ms ✓ TiffImages │ 7729.2 ms ✓ OpenEXR │ 2303.4 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt │ 3003.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt │ 2719.1 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt │ 3615.6 ms ✓ Cairo │ 4922.6 ms ✓ ImageBase │ 7646.2 ms ✓ PNGFiles │ 12262.0 ms ✓ JpegTurbo │ 12007.9 ms ✓ Sixel │ 10301.5 ms ✓ WebP │ 5170.6 ms ✓ NLSolversBase │ 7017.6 ms ✓ ImageAxes │ 7069.2 ms ✓ LineSearches │ 5534.7 ms ✓ ImageMetadata │ 11123.1 ms ✓ Optim │ 9570.5 ms ✓ Netpbm │ Info Given CairoMakie was explicitly requested, output will be shown live  │ WARNING: importing deprecated binding Makie.Combined into CairoMakie. │ , use Plot instead. │ WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. │ , use VertexGrid instead. │ WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. │ , use CellGrid instead. │ 161691.2 ms ✓ CairoMakie │ 19 dependencies successfully precompiled in 432 seconds. 298 already precompiled. │ 1 dependency had output during precompilation: │ ┌ CairoMakie │ │ [Output was shown above] │ └ └ @ Documenter ~/.julia/packages/PlantGraphs/1ZM8C/src/GraphConstruction.jl:58 ┌ Error: Doctesting failed │ exception = │ `makedocs` encountered a doctest error. Terminating build │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] runner(::Type{Documenter.Builder.Doctest}, doc::Documenter.Document) │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/builder_pipeline.jl:213 │ [3] dispatch(::Type{Documenter.Builder.DocumentPipeline}, x::Documenter.Document) │ @ Documenter.Selectors ~/.julia/packages/Documenter/ZlqFj/src/utilities/Selectors.jl:170 │ [4] #90 │ @ ~/.julia/packages/Documenter/ZlqFj/src/makedocs.jl:275 [inlined] │ [5] withenv(::Documenter.var"#90#91"{Documenter.Document}, ::Pair{String, Nothing}, ::Vararg{Pair{String, Nothing}}) │ @ Base ./env.jl:265 │ [6] #88 │ @ ~/.julia/packages/Documenter/ZlqFj/src/makedocs.jl:274 [inlined] │ [7] cd(f::Documenter.var"#88#89"{Documenter.Document}, dir::String) │ @ Base.Filesystem ./file.jl:112 │ [8] makedocs(; debug::Bool, format::Documenter.HTMLWriter.HTML, kwargs::@Kwargs{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}, remotes::Nothing, plugins::Vector{Documenter.Plugin}}) │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/makedocs.jl:273 │ [9] (::Documenter.var"#all_doctests#140"{Bool, Vector{Regex}, Vector{Documenter.Plugin}, Vector{Module}})() │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:85 │ [10] macro expansion │ @ ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 [inlined] │ [11] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 [inlined] │ [12] macro expansion │ @ ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 [inlined] │ [13] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] │ [14] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin}) │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 │ [15] doctest │ @ ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:69 [inlined] │ [16] doctest(package::Module; manual::Bool, testset::Nothing, kwargs::@Kwargs{}) │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:37 │ [17] doctest(package::Module) │ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:20 │ [18] top-level scope │ @ ~/.julia/packages/PlantGraphs/1ZM8C/test/runtests.jl:9 │ [19] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [20] top-level scope │ @ none:6 │ [21] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [22] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:297 │ [23] _start() │ @ Base ./client.jl:563 └ @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:99 Doctests: PlantGraphs: Test Failed at /home/pkgeval/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 Expression: all_doctests() Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:731 [inlined] [2] macro expansion @ ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [4] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}, plugins::Vector{Documenter.Plugin}) @ Documenter ~/.julia/packages/Documenter/ZlqFj/src/doctest.jl:110 Test Summary: | Fail Total Time Doctests: PlantGraphs | 1 1 10m15.7s RNG of the outermost testset: Random.Xoshiro(0x196431626e77ec9a, 0xc9afb973f29b8c8b, 0x86f8c52c0f33cca3, 0xa1d1da9225bf20c2, 0x860c31999a8776b8) ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PlantGraphs/1ZM8C/test/runtests.jl:9 Testing failed after 813.01s ERROR: LoadError: Package PlantGraphs errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1750.93s: package has test failures