Package evaluation of PlanktonIndividuals on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T01:09:49.624 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.47s ################################################################################ # Installation # Installing PlanktonIndividuals... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [dfeb4ede] + PlanktonIndividuals v0.7.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [a9b6321e] + Atomix v1.1.1 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [5789e2e9] + FileIO v1.17.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.13 [63c18a36] + KernelAbstractions v0.9.34 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.0 [dfeb4ede] + PlanktonIndividuals v0.7.5 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 3.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 98.17s ################################################################################ # Testing # Testing PlanktonIndividuals Status `/tmp/jl_1xH58R/Project.toml` [79e6a3ab] Adapt v4.3.0 [6e4b80f9] BenchmarkTools v1.6.0 [a2441757] Coverage v1.6.1 [033835bb] JLD2 v0.5.13 [63c18a36] KernelAbstractions v0.9.34 [cb8c808f] MeshArrays v0.3.21 [dfeb4ede] PlanktonIndividuals v0.7.5 [10745b16] Statistics v1.11.1 [09ab397b] StructArrays v0.7.1 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1xH58R/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [a9b6321e] Atomix v1.1.1 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [81a5f4ea] CatViews v1.0.0 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.0 [c27321d9] Glob v1.3.1 [cd3eb016] HTTP v1.10.16 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.13 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [cb8c808f] MeshArrays v0.3.21 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.3 [dfeb4ede] PlanktonIndividuals v0.7.5 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [ae029012] Requires v1.3.1 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [1986cc42] Unitful v1.22.0 [013be700] UnsafeAtomics v0.3.0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Precompiling packages... 13042.8 ms ✓ MeshArrays 1 dependency successfully precompiled in 13 seconds. 48 already precompiled. Precompiling packages... 9848.5 ms ✓ MeshArrays → MeshArraysJLD2Ext 1 dependency successfully precompiled in 10 seconds. 55 already precompiled. RegularRectilinearGrid{Float32, Periodic, Periodic, Bounded} domain: x ∈ [0.0, 12.0], y ∈ [0.0, 12.0], z ∈ [0.0, -8.0] topology (Tx, Ty, Tz): (Periodic, Periodic, Bounded) resolution (Nx, Ny, Nz): (4, 6, 2) halo size (Hx, Hy, Hz): (2, 2, 2) grid spacing (Δx, Δy, Δz): 3.0, 2.0, [min=4.0, max=4.0]) LatLonGrid{Float32, Periodic, Bounded, Bounded} domain: x ∈ [-180.0, 180.0], y ∈ [-80.0, 80.0], z ∈ [0.0, -20.0] topology (Tx, Ty, Tz): (Periodic, Bounded, Bounded) resolution (Nx, Ny, Nz): (360, 160, 10) halo size (Hx, Hy, Hz): (2, 2, 2) grid spacing (Δx, Δy, Δz): 1.0, 1.0, [min=2.0, max=2.0]) WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_acc_chl_kernel!(Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_acc_counts_kernel!(Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_consume_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_diags_proc_kernel!(Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_consume_kernel!(Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_loss_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_3D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_loss_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_consume_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_loss_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_0D_test.jl:11. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_consume_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu_calc_loss_kernel!(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) at none Test Summary: | Pass Total Time PlanktonIndividuals | 123 123 8m03.2s Testing PlanktonIndividuals tests passed Testing completed after 492.62s PkgEval succeeded after 628.68s