Package evaluation of PiecewiseDeterministicMarkovProcesses on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T06:22:05.006 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.55s ################################################################################ # Installation # Installing PiecewiseDeterministicMarkovProcesses... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.170.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.2 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.1 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.14.3 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.9 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.26 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.14 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.86.2 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [c3572dad] + Sundials v4.28.0 [2efcf032] + SymbolicIndexingInterface v0.3.40 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [aae0fff6] + LSODA_jll v0.1.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 62.19s ################################################################################ # Testing # Testing PiecewiseDeterministicMarkovProcesses Status `/tmp/jl_32WsZZ/Project.toml` ⌅ [f6369f11] ForwardDiff v0.10.38 [ccbc3e58] JumpProcesses v9.14.3 [7f56f5a3] LSODA v0.7.5 [1dea7af3] OrdinaryDiffEq v6.95.1 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.9 [d236fae5] PreallocationTools v0.4.26 [731186ca] RecursiveArrayTools v3.33.0 [0bca4576] SciMLBase v2.86.2 [c3572dad] Sundials v4.28.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_32WsZZ/Manifest.toml` [47edcb42] ADTypes v1.14.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.2.0 [fa961155] CEnum 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UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl Precompiling packages... 44593.3 ms ✓ ExponentialUtilities 20055.9 ms ✓ LinearSolve 11733.2 ms ✓ OrdinaryDiffEqCore 9740.2 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 5875.2 ms ✓ LinearSolve → LinearSolveEnzymeExt 9849.6 ms ✓ LinearSolve → LinearSolveSparseArraysExt 6041.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 5344.1 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 33926.1 ms ✓ NonlinearSolveQuasiNewton 46114.5 ms ✓ NonlinearSolveFirstOrder 7646.4 ms ✓ OrdinaryDiffEqExplicitRK 8556.8 ms ✓ OrdinaryDiffEqHighOrderRK 8859.3 ms ✓ OrdinaryDiffEqStabilizedRK 8187.6 ms ✓ OrdinaryDiffEqSymplecticRK 9858.1 ms ✓ OrdinaryDiffEqSSPRK 10596.0 ms ✓ OrdinaryDiffEqLowOrderRK 6573.3 ms ✓ OrdinaryDiffEqFunctionMap 15215.8 ms ✓ OrdinaryDiffEqTsit5 61122.0 ms ✓ OrdinaryDiffEqVerner 8122.2 ms ✓ OrdinaryDiffEqPRK 8369.3 ms ✓ OrdinaryDiffEqRKN 8273.2 ms ✓ OrdinaryDiffEqFeagin 7714.0 ms ✓ OrdinaryDiffEqQPRK 10809.7 ms ✓ OrdinaryDiffEqLowStorageRK 16148.5 ms ✓ OrdinaryDiffEqDifferentiation 8679.7 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 10088.9 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 7359.2 ms ✓ OrdinaryDiffEqNordsieck 13809.2 ms ✓ OrdinaryDiffEqLinear 16857.1 ms ✓ OrdinaryDiffEqExtrapolation 45189.8 ms ✓ OrdinaryDiffEqRosenbrock 42400.0 ms ✓ NonlinearSolve 19496.4 ms ✓ OrdinaryDiffEqNonlinearSolve 19645.7 ms ✓ OrdinaryDiffEqStabilizedIRK 20093.8 ms ✓ OrdinaryDiffEqSDIRK 17435.5 ms ✓ OrdinaryDiffEqIMEXMultistep 18719.0 ms ✓ OrdinaryDiffEqPDIRK 55416.4 ms ✓ OrdinaryDiffEqFIRK 21835.1 ms ✓ OrdinaryDiffEqExponentialRK 39409.7 ms ✓ OrdinaryDiffEqBDF 62693.9 ms ✓ OrdinaryDiffEqDefault Info Given OrdinaryDiffEq was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 31676.0 ms ✓ OrdinaryDiffEq 42 dependencies successfully precompiled in 842 seconds. 198 already precompiled. 36 dependencies had output during precompilation: ┌ OrdinaryDiffEqExtrapolation │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqDefault │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ NonlinearSolveQuasiNewton │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqBDF │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqNonlinearSolve │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqPDIRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqTsit5 │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqVerner │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqFIRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqExplicitRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqNordsieck │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqRKN │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqSDIRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqPRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEq │ [Output was shown above] └ ┌ OrdinaryDiffEqHighOrderRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqStabilizedRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqLowOrderRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ NonlinearSolve │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqSymplecticRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqFeagin │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqRosenbrock │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqIMEXMultistep │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqSSPRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqLowStorageRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqAdamsBashforthMoulton │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ NonlinearSolveFirstOrder │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl │ WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ OrdinaryDiffEqStabilizedIRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqDifferentiation │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqExponentialRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqFunctionMap │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqQPRK │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqLinear │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ Precompiling packages... Info Given NonlinearSolveSundialsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 14035.5 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 1 dependency successfully precompiled in 15 seconds. 191 already precompiled. 1 dependency had output during precompilation: ┌ NonlinearSolve → NonlinearSolveSundialsExt │ [Output was shown above] └ 0.105854 seconds (16.96 k allocations: 914.516 KiB, 99.95% compilation time) Comparison of solvers ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:155 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yWlnm/src/misc_utils.jl:155 10.113640 seconds (4.40 M allocations: 239.942 MiB, 1.77% gc time, 99.82% compilation time: <1% of which was recompilation) --> norm difference = 0.00020895427984513049 - solver = cvode 5.604269 seconds (1.88 M allocations: 99.737 MiB, 0.63% gc time, 99.96% compilation time: <1% of which was recompilation) --> norm difference = 4.562246893158317e-6 - solver = lsoda 3.330349 seconds (2.16 M allocations: 117.800 MiB, 0.98% gc time, 99.84% compilation time: <1% of which was recompilation) --> norm difference = 0.00020895427882905437 - solver = CVODEBDF 3.054708 seconds (1.56 M allocations: 85.502 MiB, 1.05% gc time, 99.82% compilation time: <1% of which was recompilation) --> norm difference = 9.164040960740749e-6 - solver = CVODEAdams 16.787850 seconds (6.28 M allocations: 341.418 MiB, 1.38% gc time, 99.90% compilation time: <1% of which was recompilation) --> norm difference = 0.00021445406171594072 - solver = RS23 7.586348 seconds (5.29 M allocations: 285.679 MiB, 10.17% gc time, 99.93% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = tsit5 14.130261 seconds (4.47 M allocations: 243.073 MiB, 0.36% gc time, 99.91% compilation time: <1% of which was recompilation) --> norm difference = 1.5885276383187374e-7 - solver = rodas4P-AutoDiff 12.291602 seconds (3.38 M allocations: 185.566 MiB, 1.08% gc time, 99.90% compilation time: <1% of which was recompilation) --> norm difference = 3.1827500635017714e-8 - solver = rodas5 8.668782 seconds (5.22 M allocations: 282.314 MiB, 1.23% gc time, 99.93% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = AutoTsit5RS23 0.080176 seconds (15.83 k allocations: 866.688 KiB, 98.15% compilation time) Test Summary: | Pass Total Time Example TCP | 1 1 1m30.4s WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:5. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:74 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:75 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice(ad_alg::Bool, ::Val{0}, ::Val{:forward}) at misc_utils.jl:155 └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yWlnm/src/misc_utils.jl:155 --> norm difference = 9.985930109479568e-7 - solver = lsoda --> norm difference = 1.2362318864367339e-5 - solver = cvode --> norm difference = 1.2362287630685032e-5 - solver = CVODEBDF --> norm difference = 1.534517703571936e-6 - solver = CVODEAdams --> norm difference = 3.4168918805477233e-9 - solver = tsit5 --> norm difference = 1.6708951999788724e-8 - solver = rodas4P-AutoDiff --> norm difference = 0.0065577534809497795 - solver = rodas5 --> norm difference = 2.2784790345120598e-5 - solver = RS23 --> norm difference = 4.120051351197418e-7 - solver = AutoTsit5-RS23 Test Summary: | Pass Total Time Example explosion of jump times | 1 1 46.7s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:29 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:71. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:33 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:79. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:81. Comparison of solvers - CHV ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:121 --> norm difference = 0.0023436667727310123 - solver = cvode ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 --> norm difference = 0.0021281768231347087 - solver = lsoda --> norm difference = 0.0023436725223291432 - solver = CVODEBDF --> norm difference = 0.002069344401206763 - solver = CVODEAdams --> norm difference = 0.0003403548339520057 - solver = tsit5 --> norm difference = 5.704655495719635e-5 - solver = rodas4P-noAutoDiff --> norm difference = 1.0002506769524189e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.0003403548339520057 - solver = AutoTsit5-RS23 Comparison of solvers - CHV (without saving solution) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 Comparison of solvers - CHV (limited by simulation time) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:728 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 0.252227 seconds (4.55 k allocations: 180.172 KiB) 0.246965 seconds (4.50 k allocations: 177.469 KiB) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:519 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:519 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:519 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:519 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:519 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:519 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:519 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:519 Comparison of solvers - rejection ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:176 --> norm difference = 0.001893487349736045 - solver = cvode --> norm difference = 0.001893487349736045 - solver = lsoda --> norm difference = 0.001893487349736045 - solver = CVODEBDF --> norm difference = 0.001893487349736045 - solver = CVODEAdams --> norm difference = 0.001893487349736045 - solver = tsit5 --> norm difference = 0.001893487349736045 - solver = rodas4P-noAutoDiff --> norm difference = 0.001893487349736045 - solver = rodas4P-AutoDiff --> norm difference = 0.001893487349736045 - solver = AutoTsit5-RS23 Alternate between calls CHV - Rej --> norm diff (CHV) = 0.00014644591919932282 --> norm diff (Rej) = 0.001893487349736045 Comparison of solvers, with function Delta ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:212 --> norm difference = 0.005069408256076713 - solver = cvode --> norm difference = 0.0072302110738746705 - solver = lsoda --> norm difference = 0.005070017916750658 - solver = CVODEBDF --> norm difference = 0.010638187483436923 - solver = CVODEAdams --> norm difference = 0.011875623333708063 - solver = tsit5 --> norm difference = 7.266276497830404e-5 - solver = rodas4P-noAutoDiff --> norm difference = 8.647983008813753e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.011875623333708063 - solver = AutoTsit5-RS23 --> allocations = (8816, 9616, 10416) Test Summary: | Pass Total Time Example with stiff ODE part | 74 74 2m37.0s Test Summary: | Total Time Controlling allocations | 0 0.0s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:71 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:79 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/pdmpStiff.jl:81 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:15. Test Summary: | Pass Total Time Test Rate structures 1/2 | 10 10 10.6s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesCst.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:15. --> Allocations with Composite struct 0.000408 seconds (186 allocations: 8.750 KiB) 0.000556 seconds (205 allocations: 8.969 KiB) 0.000751 seconds (225 allocations: 9.281 KiB) --> Allocations with Composite struct made of VariableRates 0.071384 seconds (14.82 k allocations: 817.812 KiB, 99.28% compilation time) 0.000515 seconds (205 allocations: 8.875 KiB) 0.000739 seconds (225 allocations: 9.188 KiB) Test Summary: | Pass Total Time Test Rate structures 2/2 | 9 9 17.0s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:25 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:4. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/test/testRatesComposite.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:37 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:17. 0.897324 seconds (267.04 k allocations: 14.271 MiB, 99.19% compilation time: 86% of which was recompilation) 1.544592 seconds (600.63 k allocations: 28.024 MiB, 96.65% compilation time: 3% of which was recompilation) 0.013982 seconds (153.59 k allocations: 6.005 MiB) 11.675112 seconds (3.07 M allocations: 168.670 MiB, 0.79% gc time, 99.65% compilation time: <1% of which was recompilation) Test Summary: | Total Time Example with 2d example, for autodiff | 0 14.9s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:4 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:5. WARNING: Method definition rate_tcp(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:17 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:17. WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmpExplosion.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:27. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:90 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp_rejection.jl:91 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:155 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/yWlnm/src/misc_utils.jl:155 --> norm difference = 0.0 - solver = cvode --> norm difference = 0.0 - solver = lsoda --> norm difference = 0.0 - solver = CVODEBDF --> norm difference = 0.0 - solver = CVODEAdams --> norm difference = 0.0 - solver = tsit5 --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = RS23 --> norm difference = 0.0 - solver = AutoTsit5RS23 test for allocations, should not depend on 0.001333 seconds (232 allocations: 8.984 KiB) 0.002324 seconds (311 allocations: 10.219 KiB) 0.003483 seconds (384 allocations: 11.359 KiB) test for multiple calls, the result should not depend on Test Summary: | Pass Total Time Rejection method | 1 1 37.2s Test Summary: | Pass Total Time Test number of fictitious jumps | 2 2 0.0s WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/tcp2d.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/examples/pdmp_example_eva.jl:11. --> Case simple chv: 6.796253 seconds (4.37 M allocations: 239.260 MiB, 2.38% gc time, 99.82% compilation time) --> For simulations rejection (Tsit5): 1.017614 seconds (296.53 k allocations: 13.944 MiB, 99.40% compilation time) --> Simulation using save_at to see sampling behaviour 0.071449 seconds (15.81 k allocations: 875.695 KiB, 98.72% compilation time) Test Summary: | Pass Total Time Neuron model | 2 2 9.0s ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/ekCSn/src/chv.jl:131 Test Summary: | Pass Total Time Example SIR | 3 3 13.4s --> rejection algorithm for SSA Test Summary: | Pass Total Time Example SIR(rejection) | 3 3 7.1s Test Summary: | Pass Total Time Neural network | 2 2 4.7s Test Summary: | Total Time JumpProcesses Wrap | 0 0.0s Testing PiecewiseDeterministicMarkovProcesses tests passed Testing completed after 1305.29s PkgEval succeeded after 1403.42s