Package evaluation of PhyloPickMe on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T06:49:47.097 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.69s ################################################################################ # Installation # Installing PhyloPickMe... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [0dfd6e21] + PhyloPickMe v1.0.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [67c07d97] + Automa v1.1.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.2 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [c2308a5c] + FASTX v2.1.7 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [c0e83750] + FastPow v0.1.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [69de0a69] + Parsers v2.8.3 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [0dfd6e21] + PhyloPickMe v1.0.9 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [fdea26ae] + SIMD v3.7.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: PhyloNetworks Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_kJ1YPT" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_DmyDEQ" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 PhyloPickMe Failed to precompile PhyloPickMe [0dfd6e21-1466-4d69-a740-ac598855cece] to "/home/pkgeval/.julia/compiled/v1.13/PhyloPickMe/jl_0PGBdw" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_AHZOAB" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_zx6KQT" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:4 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 99.2s ################################################################################ # Testing # Testing PhyloPickMe Status `/tmp/jl_J9KpBo/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [cc61a311] FLoops v0.2.2 [c0e83750] FastPow v0.1.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [0dfd6e21] PhyloPickMe v1.0.9 [10745b16] Statistics v1.11.1 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_J9KpBo/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [67c07d97] Automa v1.1.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.4.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.2 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [c2308a5c] FASTX v2.1.7 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [c0e83750] FastPow v0.1.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 ⌅ [d9f16b24] Functors v0.4.12 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.1.3 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [69de0a69] Parsers v2.8.3 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [0dfd6e21] PhyloPickMe v1.0.9 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [fdea26ae] SIMD v3.7.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ NLopt ✗ PhyloNetworks Info Given PhyloPickMe was explicitly requested, output will be shown live  ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace:  [1] top-level scope  @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [7] include_string  @ ./loading.jl:2834 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [9] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_SgO979" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] top-level scope  @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [24] include_string  @ ./loading.jl:2834 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [26] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_iis3zR" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] top-level scope  @ ~/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:4  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2978  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [24] include_string  @ ./loading.jl:2834 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [26] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:1 in expression starting at stdin:5 ✗ PhyloPickMe 0 dependencies successfully precompiled in 66 seconds. 151 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: PhyloNetworks Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_z9CQjE" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_l1BpZS" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 PhyloPickMe Failed to precompile PhyloPickMe [0dfd6e21-1466-4d69-a740-ac598855cece] to "/home/pkgeval/.julia/compiled/v1.13/PhyloPickMe/jl_SXMiap" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:303 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [7] include_string @ ./loading.jl:2834 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_SgO979" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_iis3zR" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:4 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloPickMe/nTjot/src/PhyloPickMe.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/PhyloPickMe/nTjot/test/runtests.jl:1 Testing failed after 76.75s ERROR: LoadError: Package PhyloPickMe errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 206.22s: package has syntax issues