Package evaluation of Normalization on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-28T23:55:03.003 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.09s ################################################################################ # Installation # Installing Normalization... Resolving package versions... Installed StatsAPI ───────── v1.7.0 Installed CompositionsBase ─ v0.1.2 Installed ConstructionBase ─ v1.5.8 Installed MacroTools ─────── v0.5.16 Installed InverseFunctions ─ v0.1.17 Installed Statistics ─────── v1.11.1 Installed Accessors ──────── v0.1.42 Installed Normalization ──── v0.7.3 Updating `~/.julia/environments/v1.13/Project.toml` [be38d6a3] + Normalization v0.7.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [3587e190] + InverseFunctions v0.1.17 [1914dd2f] + MacroTools v0.5.16 [be38d6a3] + Normalization v0.7.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 3.77s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5651.1 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 365.45s ################################################################################ # Testing # Testing Normalization Status `/tmp/jl_juJg9H/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [a93c6f00] DataFrames v1.7.0 [0703355e] DimensionalData v0.29.15 [8fd68953] FeatureTransforms v0.4.1 [be38d6a3] Normalization v0.7.3 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [1986cc42] Unitful v1.22.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_juJg9H/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [6e4b80f9] BenchmarkTools v1.6.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [0703355e] DimensionalData v0.29.15 [ffbed154] DocStringExtensions v0.9.4 [411431e0] Extents v0.1.5 [8fd68953] FeatureTransforms v0.4.1 [842dd82b] InlineStrings v1.4.3 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [356022a1] NamedDims v1.2.2 [be38d6a3] Normalization v0.7.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1986cc42] Unitful v1.22.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Test Summary: | Pass Total Time negdims | 3 3 3.0s Test Summary: | Pass Total Time Mapdims | 1 1 8.8s Test Summary: | Pass Total Time Constructor | 4 4 0.4s Test Summary: | Pass Total Time 1D normalization | 21 21 6.7s Test Summary: | Pass Total Time 1D half z-score normalization | 16 16 2.4s Test Summary: | Pass Total Time ZScore | 12 12 4.2s Test Summary: | Pass Total Time RobustZScore | 12 12 7.8s Test Summary: | Pass Total Time Sigmoid | 12 12 2.4s Test Summary: | Pass Total Time RobustSigmoid | 12 12 0.6s Test Summary: | Pass Total Time MinMax | 12 12 3.2s Test Summary: | Pass Total Time Center | 12 12 1.9s Test Summary: | Pass Total Time RobustCenter | 12 12 0.6s Test Summary: | Pass Total Time UnitEnergy | 12 12 2.9s Test Summary: | Pass Total Time HalfZScore | 12 12 1.1s Test Summary: | Pass Total Time RobustHalfZScore | 12 12 0.6s Test Summary: | Pass Total Time OutlierSuppress | 6 6 5.5s Test Summary: | Pass Total Time RobustOutlierSuppress | 6 6 0.4s Test Summary: | Pass Total Time 2D normalization | 10 10 8.8s Test Summary: | Pass Total Time ZScore 2D | 6 6 0.0s Test Summary: | Pass Total Time RobustZScore 2D | 6 6 0.8s Test Summary: | Pass Total Time Sigmoid 2D | 6 6 3.8s Test Summary: | Pass Total Time RobustSigmoid 2D | 6 6 0.3s Test Summary: | Pass Total Time MinMax 2D | 6 6 3.8s Test Summary: | Pass Total Time Center 2D | 6 6 2.1s Test Summary: | Pass Total Time RobustCenter 2D | 6 6 0.3s Test Summary: | Pass Total Time UnitEnergy 2D | 6 6 2.3s Test Summary: | Pass Total Time HalfZScore 2D | 6 6 1.8s Test Summary: | Pass Total Time RobustHalfZScore 2D | 6 6 0.3s Test Summary: | Pass Total Time 3D normalization | 20 20 10.8s Test Summary: | Pass Total Time Sigmoid | 9 9 2.7s Test Summary: | Pass Total Time RobustSigmoid | 9 9 2.2s Test Summary: | Pass Total Time Nansafe | 8 8 1.8s Test Summary: | Pass Total Time NaNZScore | 9 9 1.9s Test Summary: | Pass Total Time NaNSigmoid | 9 9 1.4s Test Summary: | Pass Total Time ND normalization | 80 80 24.5s Test Summary: | Pass Total Time Unitful Normalization compat | 5 5 7.6s DimensionalData compat: Error During Test at /home/pkgeval/.julia/packages/Normalization/isPyT/test/runtests.jl:401 Test threw exception Expression: Z ≈ (X .- mean(X, dims = 1)) ./ std(X, dims = 1) MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Vector{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Vector{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Vector{Float64}, A::Vector{Float64}, means::Vector{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Vector{Float64}, A::Vector{Float64}, m::Vector{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var(A::Vector{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [inlined] [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] _std @ ~/.julia/packages/DimensionalData/omXy6/src/array/methods.jl:41 [inlined] [12] std(A::DimVector{Float64, Tuple{Ti{DimensionalData.Dimensions.Lookups.Sampled{Int64, UnitRange{Int64}, DimensionalData.Dimensions.Lookups.ForwardOrdered, DimensionalData.Dimensions.Lookups.Regular{Int64}, DimensionalData.Dimensions.Lookups.Points, DimensionalData.Dimensions.Lookups.NoMetadata}}}, Tuple{}, Vector{Float64}, DimensionalData.NoName, DimensionalData.Dimensions.Lookups.NoMetadata}; corrected::Bool, mean::Nothing, dims::Int64) @ DimensionalData ~/.julia/packages/DimensionalData/omXy6/src/array/methods.jl:38 [13] top-level scope @ ~/.julia/packages/Normalization/isPyT/test/runtests.jl:391 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [15] macro expansion @ ~/.julia/packages/Normalization/isPyT/test/runtests.jl:401 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 [inlined] Test Summary: | Pass Error Total Time DimensionalData compat | 27 1 28 26.8s RNG of the outermost testset: Xoshiro(0xf8b5b6f1db3d4a6d, 0xc9107517178b5058, 0x60e87cc43d7e0cf8, 0x558f07765a0b4835, 0x8f5aba48cba475c0) ERROR: LoadError: Some tests did not pass: 27 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Normalization/isPyT/test/runtests.jl:389 Testing failed after 191.11s ERROR: LoadError: Package Normalization errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 589.33s: package tests unexpectedly errored