Package evaluation of NeXLSpectrum on Julia 1.13.0-DEV.443 (8a8e3d1f98*) started at 2025-04-29T13:12:58.318 ################################################################################ # Set-up # Set-up completed after 0.27s ################################################################################ # Installation # Installing NeXLSpectrum... Resolving package versions... Installed CRlibm ─ v0.8.0 Updating `~/.julia/environments/v1.13/Project.toml` [6c578565] + NeXLSpectrum v0.3.12 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fe54227b] + BoteSalvatICX v2.0.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 ⌅ [96374032] + CRlibm v0.8.0 [336ed68f] + CSV v0.10.15 [5d742f6a] + CSVFiles v1.0.2 [49dc2e85] + Calculus v0.5.2 [aafaddc9] + CatIndices v0.2.2 [324d7699] + CategoricalArrays v0.10.8 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[e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building CRlibm → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9d1c22cff9c04207f336b8e64840d0bd40d86e0e/build.log` Installation completed after 29.48s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 77555.2 ms ✓ TiffImages 44110.2 ms ✓ FourierTools 235884.3 ms ✓ ImageSegmentation 484686.4 ms ✓ Images 121156.4 ms ? NeXLSpectrum 4 dependencies successfully precompiled in 979 seconds. 412 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ Images │ WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. │ NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Alg end`. │ Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. └ ┌ NeXLSpectrum │ WARNING: Method definition adapt_structure(Any, OffsetArrays.OffsetArray{T, N, AA} where AA<:AbstractArray{T, N} where N where T) in module OffsetArraysAdaptExt at /home/pkgeval/.julia/packages/OffsetArrays/b7qpm/ext/OffsetArraysAdaptExt.jl:9 overwritten in module OffsetArraysAdaptExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ImageSegmentation │ WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. │ NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Alg end`. │ Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. └ Precompilation completed after 987.5s ################################################################################ # Loading # Loading NeXLSpectrum... Precompiling packages... 173037.8 ms ✓ ImageSegmentation 163255.4 ms ✓ Images Info Given NeXLSpectrum was explicitly requested, output will be shown live  WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import.  NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Alg end`.  Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. WARNING: method definition for IntervalBox at /home/pkgeval/.julia/packages/IntervalArithmetic/dhnJB/src/multidim/intervalbox.jl:21 declares type variable T but does not use it. WARNING: method definition for IntervalBox at /home/pkgeval/.julia/packages/IntervalArithmetic/dhnJB/src/multidim/intervalbox.jl:21 declares type variable N but does not use it.  7-Zip (a) [64] 17.05 : Copyright (c) 1999-2021 Igor Pavlov : 2017-08-28 p7zip Version 17.05 (locale=C.UTF-8,Utf16=on,HugeFiles=on,64 bits,128 CPUs AMD EPYC 7502 32-Core Processor (830F10),ASM,AES-NI)   Extracting archive: -- Path = Type = tar Code Page = UTF-8  Everything is Ok  Files: 2 Size: 81789056 Compressed: 2048 1.2900064e6 ms ✓ NeXLSpectrum 3 dependencies successfully precompiled in 1639 seconds. 414 already precompiled. 2 dependencies had output during precompilation: ┌ NeXLSpectrum │ [Output was shown above] └ ┌ ImageSegmentation │ WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. │ NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Alg end`. │ Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. └ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1417 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7149e875ef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30228.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) obviously_egal at /source/src/subtype.c:404 obviously_in_union at /source/src/subtype.c:538 subtype_in_env_existential at /source/src/subtype.c:2694 intersect_invariant at /source/src/subtype.c:3798 intersect at /source/src/subtype.c:4200 intersect_tuple at /source/src/subtype.c:3672 intersect at /source/src/subtype.c:4193 intersect_unionall_ at /source/src/subtype.c:3360 intersect_unionall at /source/src/subtype.c:3451 intersect at /source/src/subtype.c:4179 intersect_unionall_ at /source/src/subtype.c:3360 intersect_unionall at /source/src/subtype.c:3451 intersect at /source/src/subtype.c:4179 intersect_all at /source/src/subtype.c:4335 jl_type_intersection_env_s at /source/src/subtype.c:4583 jl_typemap_intersection_node_visitor at /source/src/typemap.c:543 jl_typemap_intersection_visitor at /source/src/typemap.c:812 jl_typemap_intersection_visitor at /source/src/typemap.c:809 jl_typemap_intersection_visitor at /source/src/typemap.c:770 ml_mtable_visitor at /source/src/gf.c:3922 [inlined] ml_matches at /source/src/gf.c:4296 ml_matches at /source/src/gf.c:1469 [inlined] cache_method at /source/src/gf.c:1479 ml_matches at /source/src/gf.c:4569 ml_matches at /source/src/gf.c:4211 [inlined] ijl_matching_methods at /source/src/gf.c:2602 _methods_by_ftype at ./runtime_internals.jl:1439 [inlined] verify_call at ./staticdata.jl:295 [inlined] verify_method at ./staticdata.jl:178 verify_method_graph at ./staticdata.jl:68 _insert_backedges at ./staticdata.jl:42 insert_backedges at ./staticdata.jl:34 [inlined] #_include_from_serialized#867 at ./loading.jl:1289 _include_from_serialized at ./loading.jl:1246 [inlined] #_require_search_from_serialized#883 at ./loading.jl:2074 _require_search_from_serialized at ./loading.jl:1981 jfptr__require_search_from_serialized_74344.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 __require_prelocked at ./loading.jl:2599 _require_prelocked at ./loading.jl:2465 macro expansion at ./loading.jl:2393 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2358 jfptr___require_24401.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:894 require at ./loading.jl:2334 jfptr_require_24456.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] call_require at /source/src/toplevel.c:501 [inlined] eval_import_path at /source/src/toplevel.c:539 jl_toplevel_eval_flex at /source/src/toplevel.c:833 jl_toplevel_eval_flex at /source/src/toplevel.c:978 ijl_toplevel_eval at /source/src/toplevel.c:1050 ijl_toplevel_eval_in at /source/src/toplevel.c:1095 eval at ./boot.jl:489 exec_options at ./client.jl:297 _start at ./client.jl:563 jfptr__start_20396.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] true_main at /source/src/jlapi.c:950 jl_repl_entrypoint at /source/src/jlapi.c:1110 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7149e8700249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x71a9f760cf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30228.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30228.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000071a9e9606590 Total snapshots: 237. Utilization: 0% ╎237 @Base/task.jl:1150 wait_forever() 236╎ 237 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x000071a9ed5fc100 Total snapshots: 237. Utilization: 0% ╎237 @Base/task.jl:1150 wait_forever() 236╎ 237 @Base/task.jl:1216 wait() [1417] signal 15: Terminated in expression starting at none:1 unknown function (ip: 0x7149e875ef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 PkgEval terminated after 2723.39s: test duration exceeded the time limit