Package evaluation of Kwant on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T01:32:57.806 ################################################################################ # Set-up # Set-up completed after 0.2s ################################################################################ # Installation # Installing Kwant... Resolving package versions... Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.13/Project.toml` [ed3f9b50] + Kwant v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.0 [8f4d0f93] + Conda v1.10.2 [53c48c17] + FixedPointNumbers v0.8.5 [682c06a0] + JSON v0.21.4 [ed3f9b50] + Kwant v0.1.0 [b964fa9f] + LaTeXStrings v1.4.0 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [d330b81b] + PyPlot v2.11.6 [189a3867] + Reexport v1.2.2 [10745b16] + Statistics v1.11.1 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 40.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 5060.5 ms ✓ Kwant 1 dependency successfully precompiled in 7 seconds. 40 already precompiled. Precompilation completed after 11.43s ################################################################################ # Loading # Loading Kwant... [ Info: Installing matplotlib via the Conda matplotlib package... [ Info: Running `conda install -q -y matplotlib` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - matplotlib The following packages will be downloaded: package | build ---------------------------|----------------- alsa-lib-1.2.14 | hb9d3cd8_0 553 KB conda-forge brotli-1.1.0 | hb9d3cd8_2 19 KB conda-forge brotli-bin-1.1.0 | hb9d3cd8_2 18 KB conda-forge cairo-1.18.4 | h3394656_0 955 KB conda-forge contourpy-1.3.2 | py312h68727a3_0 270 KB conda-forge cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge cyrus-sasl-2.1.27 | h54b06d7_7 214 KB conda-forge dbus-1.13.6 | h5008d03_3 604 KB conda-forge double-conversion-3.3.1 | h5888daf_0 68 KB conda-forge expat-2.7.0 | h5888daf_0 137 KB conda-forge font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | 0 4 KB conda-forge fonttools-4.57.0 | py312h178313f_0 2.7 MB conda-forge freetype-2.13.3 | ha770c72_1 168 KB conda-forge graphite2-1.3.13 | h59595ed_1003 95 KB conda-forge harfbuzz-11.1.0 | h3beb420_0 1.6 MB conda-forge icu-75.1 | he02047a_0 11.6 MB conda-forge kiwisolver-1.4.8 | py312h84d6215_0 70 KB conda-forge lcms2-2.17 | h717163a_0 242 KB conda-forge lerc-4.0.0 | h0aef613_1 258 KB conda-forge libbrotlicommon-1.1.0 | hb9d3cd8_2 67 KB conda-forge libbrotlidec-1.1.0 | hb9d3cd8_2 32 KB conda-forge libbrotlienc-1.1.0 | hb9d3cd8_2 275 KB conda-forge libclang-cpp20.1-20.1.3 |default_h1df26ce_0 19.9 MB conda-forge libclang13-20.1.3 |default_he06ed0a_0 11.5 MB conda-forge libcups-2.3.3 | h4637d8d_4 4.3 MB conda-forge libdeflate-1.23 | h86f0d12_0 71 KB conda-forge libdrm-2.4.124 | hb9d3cd8_0 237 KB conda-forge libegl-1.7.0 | ha4b6fd6_2 44 KB conda-forge libfreetype-2.13.3 | ha770c72_1 8 KB conda-forge libfreetype6-2.13.3 | h48d6fc4_1 371 KB conda-forge libgl-1.7.0 | ha4b6fd6_2 132 KB conda-forge libglib-2.84.1 | h2ff4ddf_0 3.8 MB conda-forge libglvnd-1.7.0 | ha4b6fd6_2 129 KB conda-forge libglx-1.7.0 | ha4b6fd6_2 74 KB conda-forge libjpeg-turbo-3.1.0 | hb9d3cd8_0 614 KB conda-forge libllvm20-20.1.3 | he9d0ab4_0 41.0 MB conda-forge libntlm-1.8 | hb9d3cd8_0 33 KB conda-forge libopengl-1.7.0 | ha4b6fd6_2 50 KB conda-forge libpciaccess-0.18 | hd590300_0 28 KB conda-forge libpng-1.6.47 | h943b412_0 282 KB conda-forge libpq-17.4 | h27ae623_1 2.6 MB conda-forge libtiff-4.7.0 | hd9ff511_4 419 KB conda-forge libwebp-base-1.5.0 | h851e524_0 420 KB conda-forge libxcb-1.17.0 | h8a09558_0 387 KB conda-forge libxkbcommon-1.9.0 | h65c71a3_0 657 KB conda-forge libxml2-2.13.7 | h4bc477f_1 676 KB conda-forge libxslt-1.1.39 | h76b75d6_0 248 KB conda-forge matplotlib-3.10.1 | py312h7900ff3_0 17 KB conda-forge matplotlib-base-3.10.1 | py312hd3ec401_0 7.9 MB conda-forge munkres-1.1.4 | pyh9f0ad1d_0 12 KB conda-forge mysql-common-9.2.0 | h266115a_0 638 KB conda-forge mysql-libs-9.2.0 | he0572af_0 1.3 MB conda-forge openjpeg-2.5.3 | h5fbd93e_0 335 KB conda-forge openldap-2.6.9 | he970967_0 766 KB conda-forge pcre2-10.44 | hba22ea6_2 930 KB conda-forge pillow-11.1.0 | py312h80c1187_0 40.8 MB conda-forge pixman-0.44.2 | h29eaf8c_0 372 KB conda-forge pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge pyparsing-3.2.3 | pyhd8ed1ab_1 94 KB conda-forge pyside6-6.9.0 | py312h91f0f75_0 9.7 MB conda-forge python-dateutil-2.9.0.post0| pyhff2d567_1 217 KB conda-forge qhull-2020.2 | h434a139_5 540 KB conda-forge qt6-main-6.9.0 | h6441bc3_1 49.1 MB conda-forge six-1.17.0 | pyhd8ed1ab_0 16 KB conda-forge tornado-6.4.2 | py312h66e93f0_0 821 KB conda-forge unicodedata2-16.0.0 | py312h66e93f0_0 395 KB conda-forge wayland-1.23.1 | h3e06ad9_1 314 KB conda-forge xcb-util-0.4.1 | hb711507_2 19 KB conda-forge xcb-util-cursor-0.1.5 | hb9d3cd8_0 20 KB conda-forge xcb-util-image-0.4.0 | hb711507_2 24 KB conda-forge xcb-util-keysyms-0.4.1 | hb711507_0 14 KB conda-forge xcb-util-renderutil-0.3.10 | hb711507_0 17 KB conda-forge xcb-util-wm-0.4.2 | hb711507_0 50 KB conda-forge xkeyboard-config-2.44 | hb9d3cd8_0 384 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb9d3cd8_0 14 KB conda-forge xorg-libxcomposite-0.4.6 | hb9d3cd8_2 13 KB conda-forge xorg-libxcursor-1.2.3 | hb9d3cd8_0 32 KB conda-forge xorg-libxdamage-1.1.6 | hb9d3cd8_0 13 KB conda-forge xorg-libxdmcp-1.1.5 | hb9d3cd8_0 19 KB conda-forge xorg-libxext-1.3.6 | hb9d3cd8_0 49 KB conda-forge xorg-libxfixes-6.0.1 | hb9d3cd8_0 19 KB conda-forge xorg-libxi-1.8.2 | hb9d3cd8_0 46 KB conda-forge xorg-libxrandr-1.5.4 | hb9d3cd8_0 29 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxtst-1.2.5 | hb9d3cd8_3 32 KB conda-forge xorg-libxxf86vm-1.1.6 | hb9d3cd8_0 17 KB conda-forge ------------------------------------------------------------ Total: 226.6 MB The following NEW packages will be INSTALLED: alsa-lib conda-forge/linux-64::alsa-lib-1.2.14-hb9d3cd8_0 brotli conda-forge/linux-64::brotli-1.1.0-hb9d3cd8_2 brotli-bin conda-forge/linux-64::brotli-bin-1.1.0-hb9d3cd8_2 cairo conda-forge/linux-64::cairo-1.18.4-h3394656_0 contourpy conda-forge/linux-64::contourpy-1.3.2-py312h68727a3_0 cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1 cyrus-sasl conda-forge/linux-64::cyrus-sasl-2.1.27-h54b06d7_7 dbus conda-forge/linux-64::dbus-1.13.6-h5008d03_3 double-conversion conda-forge/linux-64::double-conversion-3.3.1-h5888daf_0 expat conda-forge/linux-64::expat-2.7.0-h5888daf_0 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 fontconfig conda-forge/linux-64::fontconfig-2.15.0-h7e30c49_1 fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-0 fonttools conda-forge/linux-64::fonttools-4.57.0-py312h178313f_0 freetype conda-forge/linux-64::freetype-2.13.3-ha770c72_1 graphite2 conda-forge/linux-64::graphite2-1.3.13-h59595ed_1003 harfbuzz conda-forge/linux-64::harfbuzz-11.1.0-h3beb420_0 icu conda-forge/linux-64::icu-75.1-he02047a_0 kiwisolver conda-forge/linux-64::kiwisolver-1.4.8-py312h84d6215_0 lcms2 conda-forge/linux-64::lcms2-2.17-h717163a_0 lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 libbrotlicommon conda-forge/linux-64::libbrotlicommon-1.1.0-hb9d3cd8_2 libbrotlidec conda-forge/linux-64::libbrotlidec-1.1.0-hb9d3cd8_2 libbrotlienc conda-forge/linux-64::libbrotlienc-1.1.0-hb9d3cd8_2 libclang-cpp20.1 conda-forge/linux-64::libclang-cpp20.1-20.1.3-default_h1df26ce_0 libclang13 conda-forge/linux-64::libclang13-20.1.3-default_he06ed0a_0 libcups conda-forge/linux-64::libcups-2.3.3-h4637d8d_4 libdeflate conda-forge/linux-64::libdeflate-1.23-h86f0d12_0 libdrm conda-forge/linux-64::libdrm-2.4.124-hb9d3cd8_0 libegl conda-forge/linux-64::libegl-1.7.0-ha4b6fd6_2 libfreetype conda-forge/linux-64::libfreetype-2.13.3-ha770c72_1 libfreetype6 conda-forge/linux-64::libfreetype6-2.13.3-h48d6fc4_1 libgl conda-forge/linux-64::libgl-1.7.0-ha4b6fd6_2 libglib conda-forge/linux-64::libglib-2.84.1-h2ff4ddf_0 libglvnd conda-forge/linux-64::libglvnd-1.7.0-ha4b6fd6_2 libglx conda-forge/linux-64::libglx-1.7.0-ha4b6fd6_2 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.0-hb9d3cd8_0 libllvm20 conda-forge/linux-64::libllvm20-20.1.3-he9d0ab4_0 libntlm conda-forge/linux-64::libntlm-1.8-hb9d3cd8_0 libopengl conda-forge/linux-64::libopengl-1.7.0-ha4b6fd6_2 libpciaccess conda-forge/linux-64::libpciaccess-0.18-hd590300_0 libpng conda-forge/linux-64::libpng-1.6.47-h943b412_0 libpq conda-forge/linux-64::libpq-17.4-h27ae623_1 libtiff conda-forge/linux-64::libtiff-4.7.0-hd9ff511_4 libwebp-base conda-forge/linux-64::libwebp-base-1.5.0-h851e524_0 libxcb conda-forge/linux-64::libxcb-1.17.0-h8a09558_0 libxkbcommon conda-forge/linux-64::libxkbcommon-1.9.0-h65c71a3_0 libxslt conda-forge/linux-64::libxslt-1.1.39-h76b75d6_0 matplotlib conda-forge/linux-64::matplotlib-3.10.1-py312h7900ff3_0 matplotlib-base conda-forge/linux-64::matplotlib-base-3.10.1-py312hd3ec401_0 munkres conda-forge/noarch::munkres-1.1.4-pyh9f0ad1d_0 mysql-common conda-forge/linux-64::mysql-common-9.2.0-h266115a_0 mysql-libs conda-forge/linux-64::mysql-libs-9.2.0-he0572af_0 openjpeg conda-forge/linux-64::openjpeg-2.5.3-h5fbd93e_0 openldap conda-forge/linux-64::openldap-2.6.9-he970967_0 pcre2 conda-forge/linux-64::pcre2-10.44-hba22ea6_2 pillow conda-forge/linux-64::pillow-11.1.0-py312h80c1187_0 pixman conda-forge/linux-64::pixman-0.44.2-h29eaf8c_0 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 pyparsing conda-forge/noarch::pyparsing-3.2.3-pyhd8ed1ab_1 pyside6 conda-forge/linux-64::pyside6-6.9.0-py312h91f0f75_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1 qhull conda-forge/linux-64::qhull-2020.2-h434a139_5 qt6-main conda-forge/linux-64::qt6-main-6.9.0-h6441bc3_1 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 tornado conda-forge/linux-64::tornado-6.4.2-py312h66e93f0_0 unicodedata2 conda-forge/linux-64::unicodedata2-16.0.0-py312h66e93f0_0 wayland conda-forge/linux-64::wayland-1.23.1-h3e06ad9_1 xcb-util conda-forge/linux-64::xcb-util-0.4.1-hb711507_2 xcb-util-cursor conda-forge/linux-64::xcb-util-cursor-0.1.5-hb9d3cd8_0 xcb-util-image conda-forge/linux-64::xcb-util-image-0.4.0-hb711507_2 xcb-util-keysyms conda-forge/linux-64::xcb-util-keysyms-0.4.1-hb711507_0 xcb-util-renderut~ conda-forge/linux-64::xcb-util-renderutil-0.3.10-hb711507_0 xcb-util-wm conda-forge/linux-64::xcb-util-wm-0.4.2-hb711507_0 xkeyboard-config conda-forge/linux-64::xkeyboard-config-2.44-hb9d3cd8_0 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb9d3cd8_0 xorg-libxcomposite conda-forge/linux-64::xorg-libxcomposite-0.4.6-hb9d3cd8_2 xorg-libxcursor conda-forge/linux-64::xorg-libxcursor-1.2.3-hb9d3cd8_0 xorg-libxdamage conda-forge/linux-64::xorg-libxdamage-1.1.6-hb9d3cd8_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb9d3cd8_0 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.6-hb9d3cd8_0 xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-6.0.1-hb9d3cd8_0 xorg-libxi conda-forge/linux-64::xorg-libxi-1.8.2-hb9d3cd8_0 xorg-libxrandr conda-forge/linux-64::xorg-libxrandr-1.5.4-hb9d3cd8_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.5-hb9d3cd8_3 xorg-libxxf86vm conda-forge/linux-64::xorg-libxxf86vm-1.1.6-hb9d3cd8_0 The following packages will be DOWNGRADED: libxml2 2.13.7-h81593ed_1 --> 2.13.7-h4bc477f_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ERROR: InitError: PyError (PyImport_ImportModule The Python package kwant could not be imported by pyimport. Usually this means that you did not install kwant in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the kwant module, you can use `pyimport_conda("kwant", PKG)`, where PKG is the Anaconda package that contains the module kwant, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ModuleNotFoundError("No module named 'kwant'") Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] __init__() @ Kwant.lattice ~/.julia/packages/Kwant/MID6m/src/load_kwant.jl:9 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1415 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1403 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1291 [6] _include_from_serialized @ ./loading.jl:1246 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2087 [8] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2599 [9] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [10] macro expansion @ ./loading.jl:2393 [inlined] [11] macro expansion @ ./lock.jl:376 [inlined] [12] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [13] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [16] _start() @ Base ./client.jl:563 during initialization of module lattice Loading failed after 45.59s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using Kwant'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:303 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 145.93s: there were unidentified errors