Package evaluation of KinematicDriver on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T13:58:23.775 ################################################################################ # Set-up # Set-up completed after 0.24s ################################################################################ # Installation # Installing KinematicDriver... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [83200819] + KinematicDriver v0.10.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.9.4 [6e4b80f9] + BenchmarkTools v1.6.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.6.3 [70df07ce] + BracketingNonlinearSolve v1.2.0 ⌅ [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [3a4d1b5c] + ClimaComms v0.6.6 [d414da3d] + ClimaCore v0.14.31 [5c42b081] + ClimaParams v0.10.28 [fb6a15b2] + CloseOpenIntervals v0.1.13 [6a9e3e04] + CloudMicrophysics v0.22.11 [9e3b23bb] + Cloudy v0.5.6 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [861a8166] + Combinatorics v1.0.2 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [f65535da] + Convex v0.16.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.170.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [3c3547ce] + DiskArrays v0.4.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 ⌅ [aa8a2aa5] + EnsembleKalmanProcesses v1.1.7 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [c87230d0] + FFMPEG v0.4.2 [7a1cc6ca] + FFTW v1.8.1 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.14 [d54b0c1a] + GaussQuadrature v0.5.8 [e4b2fa32] + GaussianRandomFields v2.2.6 [c145ed77] + GenericSchur v0.5.5 [88fa7841] + GilbertCurves v0.1.0 [42e2da0e] + Grisu v1.0.2 [19dc6840] + HCubature v1.7.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.16 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.34 [83200819] + KinematicDriver v0.10.2 ⌅ [ba0b0d4f] + Krylov v0.9.10 ⌅ [0b1a1467] + KrylovKit v0.8.3 [40e66cde] + LDLFactorizations v0.10.1 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.7 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [9dccce8e] + 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v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 18.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 12198.6 ms ✓ TaylorSeries ✗ JLD2 22391.5 ms ✓ LinearSolve 13799.2 ms ✓ Cloudy 267282.3 ms ✓ EnsembleKalmanProcesses 3982.6 ms ✓ TaylorSeries → TaylorSeriesRATExt 2974.0 ms ✓ CubedSphere 3388.5 ms ✓ TaylorSeries → TaylorSeriesSAExt ✗ TaylorSeries → TaylorSeriesJLD2Ext 12902.0 ms ✓ LinearSolve → LinearSolveKernelAbstractionsExt 7745.0 ms ✓ LinearSolve → LinearSolveEnzymeExt 12759.8 ms ✓ LinearSolve → LinearSolveSparseArraysExt 39672.9 ms ✓ LinearSolve → LinearSolveBandedMatricesExt 5698.1 ms ✓ LinearSolve → LinearSolveKrylovKitExt 23630.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 46367.7 ms ✓ ClimaCore 104409.2 ms ✓ OrdinaryDiffEqDifferentiation 142538.8 ms ✓ NonlinearSolveFirstOrder 32389.7 ms ✓ NonlinearSolveQuasiNewton 66395.1 ms ✓ ClimaCore → KrylovExt 49895.2 ms ✓ OrdinaryDiffEqRosenbrock 18797.1 ms ✓ OrdinaryDiffEqExtrapolation 9569.6 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 132459.7 ms ✓ NonlinearSolve 232323.7 ms ✓ OrdinaryDiffEqNonlinearSolve 22013.7 ms ✓ OrdinaryDiffEqPDIRK 18769.3 ms ✓ OrdinaryDiffEqStabilizedIRK 22209.5 ms ✓ OrdinaryDiffEqSDIRK 20346.2 ms ✓ OrdinaryDiffEqIMEXMultistep 60200.9 ms ✓ OrdinaryDiffEqFIRK 23946.9 ms ✓ OrdinaryDiffEqExponentialRK 43552.0 ms ✓ OrdinaryDiffEqBDF 206567.3 ms ✓ OrdinaryDiffEqDefault 198058.3 ms ✓ OrdinaryDiffEq ✗ KinematicDriver 32 dependencies successfully precompiled in 2616 seconds. 478 already precompiled. 5 dependencies had output during precompilation: ┌ ClimaCore │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ NonlinearSolveFirstOrder │ WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ ClimaCore → KrylovExt │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ NonlinearSolve │ WARNING: Detected access to binding `SimpleNonlinearSolve.SimpleNewtonRaphson` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ OrdinaryDiffEqNonlinearSolve │ WARNING: Detected access to binding `SimpleNonlinearSolve.SimpleNewtonRaphson` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: KinematicDriver Failed to precompile KinematicDriver [83200819-b45f-4027-aa6a-8223b29c73a7] to "/home/pkgeval/.julia/compiled/v1.13/KinematicDriver/jl_Xthcmp" (ProcessExited(1)). WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. ERROR: LoadError: UndefVarError: `Observations` not defined in `EnsembleKalmanProcesses` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/KinematicDriver/f0yAO/src/CalibrateCMP/CalibrateCMP.jl:15 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/KinematicDriver/f0yAO/src/KinematicDriver.jl:8 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [9] include_string @ ./loading.jl:2834 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/KinematicDriver/f0yAO/src/CalibrateCMP/CalibrateCMP.jl:1 in expression starting at /home/pkgeval/.julia/packages/KinematicDriver/f0yAO/src/KinematicDriver.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2606.01s ################################################################################ # Loading # Loading KinematicDriver... Precompiling packages... ✗ JLD2 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 652 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7ca6fd149f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007ca6f0ed9b40 Total snapshots: 419. Utilization: 0% ╎419 @Base/task.jl:1150 wait_forever() 418╎ 419 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007ca6f2ffc100 Total snapshots: 419. Utilization: 0% ╎419 @Base/task.jl:1150 wait_forever() 418╎ 419 @Base/task.jl:1216 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7e2987706f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007e2953dac5b0 Total snapshots: 442. Utilization: 0% ╎442 @Base/task.jl:1150 wait_forever() 441╎ 442 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007e297d5fc100 Total snapshots: 442. Utilization: 0% ╎442 @Base/task.jl:1150 wait_forever() 441╎ 442 @Base/task.jl:1216 wait() [652] signal 15: Terminated in expression starting at none:1 unknown function (ip: 0x7ca6fd149f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 PkgEval terminated after 2732.57s: test duration exceeded the time limit