Package evaluation of Kinematic1D on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T13:58:51.810 ################################################################################ # Set-up # Set-up completed after 0.29s ################################################################################ # Installation # Installing Kinematic1D... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [a8a3bb05] + Kinematic1D v0.7.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [ab4f0b2a] + BFloat16s v0.5.1 [aae01518] + BandedMatrices v1.9.4 [6e4b80f9] + BenchmarkTools v1.6.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [fa961155] + CEnum v0.5.0 ⌅ [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 ⌃ [052768ef] + CUDA v5.5.0 [1af6417a] + CUDA_Runtime_Discovery v0.3.5 [d360d2e6] + ChainRulesCore v1.25.1 ⌅ [3a4d1b5c] + ClimaComms v0.5.8 ⌅ [d414da3d] + ClimaCore v0.13.4 ⌃ [cf7c7e5a] + ClimaCorePlots v0.2.10 [5c42b081] + ClimaParams v0.10.28 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [6a9e3e04] + CloudMicrophysics v0.18.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [f65535da] + Convex v0.16.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 ⌅ [7445602f] + CubedSphere v0.2.6 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 ⌃ [2b5f629d] + DiffEqBase v6.151.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌃ [a0c0ee7d] + DifferentiationInterface v0.6.26 [3c3547ce] + DiskArrays v0.4.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [b305315f] + Elliptic v1.0.1 ⌅ [aa8a2aa5] + EnsembleKalmanProcesses v1.1.7 [4e289a0a] + EnumX v1.0.5 ⌅ [f151be2c] + EnzymeCore v0.7.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [c87230d0] + FFMPEG v0.4.2 [7a1cc6ca] + FFTW v1.8.1 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [29a986be] + FastLapackInterface v2.0.4 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [0c68f7d7] + GPUArrays v10.3.1 ⌅ [46192b85] + GPUArraysCore v0.1.6 ⌅ [61eb1bfa] + GPUCompiler v0.27.8 [28b8d3ca] + GR v0.73.14 [d54b0c1a] + GaussQuadrature v0.5.8 [e4b2fa32] + GaussianRandomFields v2.2.6 [c145ed77] + GenericSchur v0.5.5 [88fa7841] + GilbertCurves v0.1.0 [86223c79] + Graphs v1.12.1 [42e2da0e] + Grisu v1.0.2 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.16 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [ae98c720] + Jieko v0.2.1 [ef3ab10e] + KLU v0.6.0 [63c18a36] + KernelAbstractions v0.9.34 [a8a3bb05] + Kinematic1D v0.7.0 ⌅ [ba0b0d4f] + Krylov v0.9.10 ⌅ [0b1a1467] + KrylovKit v0.6.1 [40e66cde] + LDLFactorizations v0.10.1 [929cbde3] + LLVM v9.3.1 [8b046642] + LLVMLoopInfo v1.0.0 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.7 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [5078a376] + LazyArrays v1.10.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [d3d80556] + LineSearches v7.3.0 ⌅ [7ed4a6bd] + LinearSolve v2.30.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [bdcacae8] + LoopVectorization v0.12.172 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.39.0 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [c3c07f87] + MultiBroadcastFusion v0.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [85f8d34a] + NCDatasets v0.14.7 ⌃ [d41bc354] + NLSolversBase v7.8.3 ⌅ [5da4648a] + NVTX v0.3.5 [77ba4419] + NaNMath v1.1.3 ⌅ [8913a72c] + NonlinearSolve v3.14.0 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.4.3 ⌃ [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 ⌃ [1dea7af3] + OrdinaryDiffEq v6.87.0 [90014a1f] + PDMats v0.11.34 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.13 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.26 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [49802e3a] + ProgressBars v1.5.1 [33c8b6b6] + ProgressLogging v0.1.4 [43287f4e] + 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[6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 18.87s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 5002.3 ms ✓ MultiBroadcastFusion 2295.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1063.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1079.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1671.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt ✗ JLD2 3061.0 ms ✓ KernelAbstractions → EnzymeExt 3994.9 ms ✓ TaylorSeries → TaylorSeriesRATExt 35746.5 ms ✓ SciMLBase 11253.2 ms ? GPUCompiler 2191.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3320.5 ms ✓ FastBroadcast 4158.1 ms ✓ CubedSphere 33941.7 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 54684.5 ms ✓ LoopVectorization → ForwardDiffExt 27768.4 ms ✓ CloudMicrophysics ✗ Optim ✗ TaylorSeries → TaylorSeriesJLD2Ext 5027.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 11562.7 ms ? CUDA 8601.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt ✗ Optim → OptimMOIExt ✗ LinearSolve 12350.8 ms ? CUDA → ChainRulesCoreExt 12713.9 ms ? CUDA → SpecialFunctionsExt 12555.6 ms ? CUDA → EnzymeCoreExt 11152.6 ms ? Atomix → AtomixCUDAExt 11597.3 ms ? ArrayInterface → ArrayInterfaceCUDAExt 18473.6 ms ? MPI → CUDAExt 41726.3 ms ✓ DiffEqBase ✗ EnsembleKalmanProcesses ✗ LinearSolve → LinearSolveKernelAbstractionsExt ✗ LinearSolve → LinearSolveBandedMatricesExt 12430.8 ms ? LinearSolve → LinearSolveCUDAExt ✗ LinearSolve → LinearSolveKrylovKitExt ✗ LinearSolve → LinearSolveRecursiveArrayToolsExt 12508.3 ms ? ClimaComms 52338.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 26997.5 ms ✓ DiffEqBase → DiffEqBaseMPIExt 21025.7 ms ? DiffEqBase → DiffEqBaseCUDAExt 121591.4 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 11016.8 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 75941.3 ms ✓ SimpleNonlinearSolve 18696.7 ms ? ClimaCore 140187.5 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 19881.9 ms ? ClimaCorePlots 12775.6 ms ? ClimaCore → KrylovExt ✗ NonlinearSolve ✗ NonlinearSolve → NonlinearSolveBandedMatricesExt ✗ OrdinaryDiffEq ✗ Kinematic1D 23 dependencies successfully precompiled in 2378 seconds. 449 already precompiled. 14 dependencies failed but may be precompilable after restarting julia 18 dependencies had output during precompilation: ┌ DiffEqBase → DiffEqBaseDistributionsExt │ WARNING: Imported binding SciMLBase.AbstractDiffEqLinearOperator was undeclared at import time during import to DiffEqBase. └ ┌ CUDA → EnzymeCoreExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ClimaCore │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Atomix → AtomixCUDAExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ArrayInterface → ArrayInterfaceCUDAExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt │ WARNING: Imported binding SciMLBase.AbstractDiffEqLinearOperator was undeclared at import time during import to DiffEqBase. └ ┌ DiffEqBase │ WARNING: Imported binding SciMLBase.AbstractDiffEqLinearOperator was undeclared at import time during import to DiffEqBase. └ ┌ MPI → CUDAExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CUDA → ChainRulesCoreExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ WARNING: Imported binding SciMLBase.AbstractDiffEqLinearOperator was undeclared at import time during import to DiffEqBase. └ ┌ CUDA │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ClimaCore → KrylovExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ LinearSolve → LinearSolveCUDAExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CUDA → SpecialFunctionsExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase → DiffEqBaseCUDAExt │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ GPUCompiler │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ClimaComms │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ClimaCorePlots │ WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. │ NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. │ Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. │ WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2CW9L/src/jlgen.jl:38. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: Kinematic1D Failed to precompile Kinematic1D [a8a3bb05-6cc5-4342-abf6-5cc636bd2b35] to "/home/pkgeval/.julia/compiled/v1.13/Kinematic1D/jl_N8BCjM" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `DiffEqArrayOperator` not defined in `LinearSolve` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/Y0uGw/src/default.jl:48 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/LinearSolve/Y0uGw/src/LinearSolve.jl:133 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [9] include_string @ ./loading.jl:2834 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/Y0uGw/src/default.jl:48 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/Y0uGw/src/LinearSolve.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] to "/home/pkgeval/.julia/compiled/v1.13/LinearSolve/jl_hgdIJW" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/OrdinaryDiffEq/s27pa/src/OrdinaryDiffEq.jl:25 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/s27pa/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEq/jl_fzF7nJ" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/Kinematic1D/Oua8O/src/Common/Common.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [20] top-level scope @ ~/.julia/packages/Kinematic1D/Oua8O/src/Kinematic1D.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:303 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [26] include_string @ ./loading.jl:2834 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [28] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Kinematic1D/Oua8O/src/Common/Common.jl:1 in expression starting at /home/pkgeval/.julia/packages/Kinematic1D/Oua8O/src/Kinematic1D.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2372.29s ################################################################################ # Loading # Loading Kinematic1D... Precompiling packages... 49715.8 ms ✓ ExponentialUtilities ✗ JLD2 3872.7 ms ✓ TaylorSeries → TaylorSeriesRATExt 10909.8 ms ? GPUCompiler 41154.8 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 6803.6 ms ✓ LoopVectorization → ForwardDiffExt ✗ Optim 9109.8 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 12278.3 ms ✓ DiffEqBase → DiffEqBaseMPIExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 914 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x757046807f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000075703a187940 Total snapshots: 248. Utilization: 0% ╎248 @Base/task.jl:1150 wait_forever() 247╎ 248 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x000075703c7fc100 Total snapshots: 248. Utilization: 0% ╎248 @Base/task.jl:1150 wait_forever() 247╎ 248 @Base/task.jl:1216 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7b53df0f7f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007b53abdc0790 Total snapshots: 264. Utilization: 0% ╎264 @Base/task.jl:1150 wait_forever() 263╎ 264 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007b53d4ffc100 Total snapshots: 264. Utilization: 0% ╎264 @Base/task.jl:1150 wait_forever() 263╎ 264 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 unknown function (ip: 0x7b53df0f7f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 [914] signal 15: Terminated in expression starting at none:1 unknown function (ip: 0x757046807f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 21355091 (Pool: 21354448; Big: 643); GC: 12 jfptr_wait_forever_30242.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3479 [inlined] ijl_apply_generic at /source/src/gf.c:3679 jl_apply at /source/src/julia.h:2348 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 12169956 (Pool: 12169691; Big: 265); GC: 27 ✗ DiffEqBase → DiffEqBaseDistributionsExt PkgEval terminated after 2755.22s: test duration exceeded the time limit