Package evaluation of Jags on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T07:44:43.932


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.44s


################################################################################
# Installation
#

Installing Jags...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [7de783dc] + Jags v3.1.3
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [621f4979] + AbstractFFTs v1.5.0
  [80f14c24] + AbstractMCMC v5.6.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.5.8
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
⌅ [e30172f5] + Documenter v0.27.25
  [7a1cc6ca] + FFTW v1.8.1
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [b5f81e59] + IOCapture v0.2.5
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] + InlineStrings v1.4.3
  [a98d9a8b] + Interpolations v0.15.1
  [8197267c] + IntervalSets v0.7.11
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [7de783dc] + Jags v3.1.3
  [5ab0869b] + KernelDensity v0.6.9
  [b964fa9f] + LaTeXStrings v1.4.0
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] + LogDensityProblems v2.1.2
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [c7f686f2] + MCMCChains v6.0.7
  [be115224] + MCMCDiagnosticTools v0.3.14
  [e80e1ace] + MLJModelInterface v1.11.1
  [1914dd2f] + MacroTools v0.5.16
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [c020b1a1] + NaturalSort v1.0.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.4
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [30f210dd] + ScientificTypesBase v3.0.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.5.0
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [5d786b92] + TerminalLoggers v0.1.7
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [ea10d353] + WeakRefStrings v1.4.2
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [856f044c] + MKL_jll v2025.0.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.04s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 73.73s


################################################################################
# Testing
#

     Testing Jags
      Status `/tmp/jl_UInlw2/Project.toml`
  [34da2185] Compat v4.16.0
  [7de783dc] Jags v3.1.3
  [10745b16] Statistics v1.11.1
  [f3b207a7] StatsPlots v0.15.7
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_UInlw2/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [621f4979] AbstractFFTs v1.5.0
  [80f14c24] AbstractMCMC v5.6.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [7d9fca2a] Arpack v0.5.4
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [d1d4a3ce] BitFlags v0.1.9
  [336ed68f] CSV v0.10.15
  [d360d2e6] ChainRulesCore v1.25.1
  [aaaa29a8] Clustering v0.15.8
  [944b1d66] CodecZlib v0.7.8
  [35d6a980] ColorSchemes v3.29.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.0
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.5.8
  [d38c429a] Contour v0.6.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [8bb1440f] DelimitedFiles v1.9.1
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.119
  [ffbed154] DocStringExtensions v0.9.4
⌅ [e30172f5] Documenter v0.27.25
  [460bff9d] ExceptionUnwrapping v0.1.11
  [c87230d0] FFMPEG v0.4.2
  [7a1cc6ca] FFTW v1.8.1
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [28b8d3ca] GR v0.73.14
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v1.10.16
  [34004b35] HypergeometricFunctions v0.3.28
  [b5f81e59] IOCapture v0.2.5
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.3
  [a98d9a8b] Interpolations v0.15.1
  [8197267c] IntervalSets v0.7.11
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [1019f520] JLFzf v0.1.11
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [7de783dc] Jags v3.1.3
  [5ab0869b] KernelDensity v0.6.9
  [b964fa9f] LaTeXStrings v1.4.0
  [23fbe1c1] Latexify v0.16.7
  [1d6d02ad] LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] LogDensityProblems v2.1.2
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [c7f686f2] MCMCChains v6.0.7
  [be115224] MCMCDiagnosticTools v0.3.14
  [e80e1ace] MLJModelInterface v1.11.1
  [1914dd2f] MacroTools v0.5.16
  [739be429] MbedTLS v1.1.9
  [442fdcdd] Measures v0.3.2
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [6f286f6a] MultivariateStats v0.10.3
  [77ba4419] NaNMath v1.1.3
  [c020b1a1] NaturalSort v1.0.0
  [b8a86587] NearestNeighbors v0.4.21
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [4d8831e6] OpenSSL v1.4.3
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.34
  [69de0a69] Parsers v2.8.3
  [ccf2f8ad] PlotThemes v3.3.0
  [995b91a9] PlotUtils v1.4.3
  [91a5bcdd] Plots v1.40.13
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [30f210dd] ScientificTypesBase v3.0.0
  [6c6a2e73] Scratch v1.2.1
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.2.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [171d559e] SplittablesBase v0.1.15
  [860ef19b] StableRNGs v1.0.2
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [64bff920] StatisticalTraits v3.4.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.5.0
  [f3b207a7] StatsPlots v0.15.7
  [892a3eda] StringManipulation v0.4.1
  [ab02a1b2] TableOperations v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [62fd8b95] TensorCore v0.1.1
  [5d786b92] TerminalLoggers v0.1.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [28d57a85] Transducers v0.4.84
  [5c2747f8] URIs v1.5.2
  [1cfade01] UnicodeFun v0.4.1
  [1986cc42] Unitful v1.22.0
  [45397f5d] UnitfulLatexify v1.6.4
  [41fe7b60] Unzip v0.2.0
  [ea10d353] WeakRefStrings v1.4.2
  [cc8bc4a8] Widgets v0.6.7
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
⌅ [68821587] Arpack_jll v3.5.1+1
  [6e34b625] Bzip2_jll v1.0.9+0
⌃ [83423d85] Cairo_jll v1.18.4+0
  [ee1fde0b] Dbus_jll v1.16.2+0
  [2702e6a9] EpollShim_jll v0.0.20230411+1
  [2e619515] Expat_jll v2.6.5+0
⌅ [b22a6f82] FFMPEG_jll v4.4.4+1
  [f5851436] FFTW_jll v3.3.11+0
  [a3f928ae] Fontconfig_jll v2.16.0+0
  [d7e528f0] FreeType2_jll v2.13.4+0
  [559328eb] FriBidi_jll v1.0.17+0
  [0656b61e] GLFW_jll v3.4.0+2
  [d2c73de3] GR_jll v0.73.14+0
  [78b55507] Gettext_jll v0.21.0+0
⌃ [7746bdde] Glib_jll v2.82.4+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.0+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [aacddb02] JpegTurbo_jll v3.1.1+0
  [c1c5ebd0] LAME_jll v3.100.2+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
⌅ [e9f186c6] Libffi_jll v3.2.2+2
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.0+0
  [89763e89] Libtiff_jll v4.7.1+0
  [38a345b3] Libuuid_jll v2.41.0+0
  [856f044c] MKL_jll v2025.0.1+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+2
  [e7412a2a] Ogg_jll v1.3.5+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.3.3+0
  [36c8627f] Pango_jll v1.56.1+0
  [30392449] Pixman_jll v0.44.2+0
⌅ [c0090381] Qt6Base_jll v6.7.1+1
⌅ [629bc702] Qt6Declarative_jll v6.7.1+2
⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1
⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1
  [f50d1b31] Rmath_jll v0.5.1+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
⌃ [a2964d1f] Wayland_jll v1.21.0+2
  [2381bf8a] Wayland_protocols_jll v1.36.0+0
⌅ [02c8fc9c] XML2_jll v2.13.6+1
  [ffd25f8a] XZ_jll v5.8.1+0
  [f67eecfb] Xorg_libICE_jll v1.1.2+0
  [c834827a] Xorg_libSM_jll v1.2.6+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [935fb764] Xorg_libXcursor_jll v1.2.4+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [d091e8ba] Xorg_libXfixes_jll v6.0.1+0
  [a51aa0fd] Xorg_libXi_jll v1.8.3+0
  [d1454406] Xorg_libXinerama_jll v1.1.6+0
  [ec84b674] Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.3+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.7+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [35ca27e7] eudev_jll v3.2.9+0
  [214eeab7] fzf_jll v0.61.1+0
  [1a1c6b14] gperf_jll v3.1.1+1
  [a4ae2306] libaom_jll v3.11.0+0
  [0ac62f75] libass_jll v0.15.2+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [2db6ffa8] libevdev_jll v1.11.0+0
  [f638f0a6] libfdk_aac_jll v2.0.3+0
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⌅ [1270edf5] x264_jll v2021.5.5+0
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Running tests for Jags-j1.7-v3.1.0
Precompiling packages...
Info Given Jags was explicitly requested, output will be shown live 
WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`).
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  31211.3 ms  ? Jags

┌ Warning: Did not find JAGS in the PATH.
└ @ Jags ~/.julia/packages/Jags/m6soz/src/Jags.jl:43
┌ Warning: Environment variable JAGS_HOME not found. Use set_jags_home!.
└ @ Jags ~/.julia/packages/Jags/m6soz/src/Jags.jl:44
Run execution_tests only if Jags is available


JAGS_HOME not found.
Skipping all tests that depend on the Jags executable!

     Testing Jags tests passed 

Testing completed after 85.64s

PkgEval succeeded after 184.27s